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Protein structure networks

MAGIN-GO: Protein function prediction based on dual graph neural networks and gene ontology structure

Runxin Li, Wentao Xie, [ ... ], Wei Peng

Classification of virulence factors based on dual-channel neural networks with pre-trained language models

Guanghui Li, Peiyang Song, Jiawei Luo, Cheng Liang

Leveraging dynamic stability to infer regulation in protein-protein interaction networks: A study of infectious vulnerability in COPD

Joyce Reimer, Jeffrey Page, [ ... ], Gordon Broderick

Network pharmacognosy of Galphimia glauca: Mapping the molecular landscape of a traditional Mexican medicinal plant

María José Cambero Acosta, Guillermo de Anda-Jáuregui

Mechanistic insights into Alpha-Synuclein binding to P2RX7: A molecular dynamic and docking study

Mukesh Kumar, Kanchan Singh, [ ... ], Mohini Saini

Improving structure-based protein-ligand affinity prediction by graph representation learning and ensemble learning

Jia Guo

SARS-CoV-2 protein structure and sequence mutations: Evolutionary analysis and effects on virus variants

Ugo Lomoio, Barbara Puccio, [ ... ], Pierangelo Veltri

Numerical simulations of the soliton dynamics for a nonlinear biological model: Modulation instability analysis

Miguel Vivas-Cortez, Saima Arshed, [ ... ], Ghazala Akram

Ranking influential nodes in complex networks with community structure

Stephany Rajeh, Hocine Cherifi

Highly scalable maximum likelihood and conjugate Bayesian inference for ERGMs on graph sets with equivalent vertices

Fan Yin, Carter T. Butts

SenseNet, a tool for analysis of protein structure networks obtained from molecular dynamics simulations

Markus Schneider, Iris Antes

Linking protein structural and functional change to mutation using amino acid networks

Cristina Sotomayor-Vivas, Enrique Hernández-Lemus, Rodrigo Dorantes-Gilardi

Self-organized emergence of folded protein-like network structures from geometric constraints

Nora Molkenthin, Steffen Mühle, Antonia S. J. S. Mey, Marc Timme

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