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Protein structure networks

Perturbation Centrality and Turbine: A Novel Centrality Measure Obtained Using a Versatile Network Dynamics Tool

Kristóf Z. Szalay, Peter Csermely

Cross-Link Guided Molecular Modeling with ROSETTA

Abdullah Kahraman, Franz Herzog, [ ... ], Lars Malmström

Protein Similarity Networks Reveal Relationships among Sequence, Structure, and Function within the Cupin Superfamily

Richard Uberto, Ellen W. Moomaw

Hot Spots in a Network of Functional Sites

Pemra Ozbek, Seren Soner, Turkan Haliloglu

Differential Modulation of Functional Dynamics and Allosteric Interactions in the Hsp90-Cochaperone Complexes with p23 and Aha1: A Computational Study

Kristin Blacklock, Gennady M. Verkhivker

Link Clustering Reveals Structural Characteristics and Biological Contexts in Signed Molecular Networks

Chen-Ching Lin, Chia-Hsien Lee, [ ... ], Hsuan-Cheng Huang

Link Clustering with Extended Link Similarity and EQ Evaluation Division

Lan Huang, Guishen Wang, [ ... ], Chao Su

Protein Complex Detection via Weighted Ensemble Clustering Based on Bayesian Nonnegative Matrix Factorization

Le Ou-Yang, Dao-Qing Dai, Xiao-Fei Zhang

Construction of Ontology Augmented Networks for Protein Complex Prediction

Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang

CNNcon: Improved Protein Contact Maps Prediction Using Cascaded Neural Networks

Wang Ding, Jiang Xie, [ ... ], Wu Zhang

Hidden Information Revealed by Optimal Community Structure from a Protein-Complex Bipartite Network Improves Protein Function Prediction

Juyong Lee, Jooyoung Lee

Local Network Patterns in Protein-Protein Interfaces

Qiang Luo, Rebecca Hamer, Gesine Reinert, Charlotte M. Deane

Interaction Signatures Stabilizing the NAD(P)-Binding Rossmann Fold: A Structure Network Approach

Moitrayee Bhattacharyya, Roopali Upadhyay, Saraswathi Vishveshwara

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