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Protein structure networks

MAGIN-GO: Protein function prediction based on dual graph neural networks and gene ontology structure

Runxin Li, Wentao Xie, Zhenhong Shang, Xiaowu Li, Guofeng Shu, Lianyin Jia, Wei Peng

published 09 Feb 2026

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Classification of virulence factors based on dual-channel neural networks with pre-trained language models

Guanghui Li, Peiyang Song, Jiawei Luo, Cheng Liang

published 05 Jan 2026

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Leveraging dynamic stability to infer regulation in protein-protein interaction networks: A study of infectious vulnerability in COPD

Joyce Reimer, Jeffrey Page, Pranta Saha, Shichen Shen, Xiaoyu Zhu, Shuo Qian, Manoj Mammen, Jun Qu, Sanjay Sethi, Gordon Broderick

published 05 Sep 2025

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Network pharmacognosy of Galphimia glauca: Mapping the molecular landscape of a traditional Mexican medicinal plant

María José Cambero Acosta, Guillermo de Anda-Jáuregui

published 01 Jul 2025

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Mechanistic insights into Alpha-Synuclein binding to P2RX7: A molecular dynamic and docking study

Mukesh Kumar, Kanchan Singh, Jayant Joshi, Shreya Sharma, Amit Kumar, Karuna Irungbam, Manish Mahawar, Mohini Saini

published 02 May 2025

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Improving structure-based protein-ligand affinity prediction by graph representation learning and ensemble learning

Jia Guo

published 17 Jan 2024

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SARS-CoV-2 protein structure and sequence mutations: Evolutionary analysis and effects on virus variants

Ugo Lomoio, Barbara Puccio, Giuseppe Tradigo, Pietro Hiram Guzzi, Pierangelo Veltri

published 20 Jul 2023

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Numerical simulations of the soliton dynamics for a nonlinear biological model: Modulation instability analysis

Miguel Vivas-Cortez, Saima Arshed, Maasoomah Sadaf, Zahida Perveen, Ghazala Akram

published 16 Feb 2023

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Ranking influential nodes in complex networks with community structure

Stephany Rajeh, Hocine Cherifi

published 29 Aug 2022

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Highly scalable maximum likelihood and conjugate Bayesian inference for ERGMs on graph sets with equivalent vertices

Fan Yin, Carter T. Butts

published 26 Aug 2022

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SenseNet, a tool for analysis of protein structure networks obtained from molecular dynamics simulations

Markus Schneider, Iris Antes

published 17 Mar 2022

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Linking protein structural and functional change to mutation using amino acid networks

Cristina Sotomayor-Vivas, Enrique Hernández-Lemus, Rodrigo Dorantes-Gilardi

published 21 Jan 2022

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Self-organized emergence of folded protein-like network structures from geometric constraints

Nora Molkenthin, Steffen Mühle, Antonia S. J. S. Mey, Marc Timme

published 27 Feb 2020

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