HAM-ART: An optimised culture-free Hi-C metagenomics pipeline for tracking antimicrobial resistance genes in complex microbial communities
Kalmar et al. present the HAM-ART pipeline, optimized for the generation of metagenome-assembled genomes. They demonstrate the performance of the pipeline in a study comparing 100 pig fecal microbiomes from low- and high-antimicrobial use pig farms.
Image credit: Juan Hernandez-Garcia