September 12, 2024
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10/02/2024
Formal Comment
This piece investigates the findings of a recent paper that claimed t-SNE and UMAP embeddings of single-cell datasets are “specious” and fail to capture true biological structure.
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Current Issue September 2024
10/01/2024
Research Article
Plant viruses threaten food security and are often transmitted by insect vectors. Non-persistently transmitted (NPT) plant viruses are transmitted almost exclusively by aphids.
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09/16/2024
Software
The authors present an R package, pathlinkR, that is designed to aid transcriptomic analyses by streamlining and simplifying the process of analyzing and interpreting differentially expressed genes derived from human RNA-Seq data.
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09/05/2024
Research Article
Compartmental models provide simple and efficient tools to analyze the relevant transmission processes during an outbreak, to produce short-term forecasts or transmission scenarios, and to assess the impact of vaccination campaigns
08/08/2024
Research Article
A new method for evaluating a medical device is an in silico clinical trial, where the device performance is tested using computational models representing a cohort of patients.
08/07/2024
Research Article
A protein superfold is a type of protein fold that is observed in at least three distinct, non-homologous protein families. Structural classification studies have revealed a limited number of prevalent superfolds alongside several infrequent occurring folds.
08/09/2024
Research Article
Here, we examine the complex relationship between somatic evolution and phenotypic plasticity, explicitly focusing on the interplay between cell migration and proliferation.
07/29/2024
Research Article
This study found that there is an optimal ratio of self-propulsion speed and overlap avoidance that maximises collective alignment.
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07/24/2024
Research Article
Adaptive Immune Receptor Repertoire sequencing is a valuable experimental tool to study the immune state in health and following immune challenges.
07/26/2024
Software
Adaptive Immune Receptor Repertoire sequencing is a valuable experimental tool to study the immune state in health and following immune challenges.
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This Collection aims to increase the coverage of computational biology-related topics in Wikipedia by rewarding authors with a citable, PubMed-indexed static version of the living document on Wikipedia.
This series of perspective articles from computational biologists in a variety of countries, offers their personal viewpoint on the history, current status, and future of computational biology in their region.
This collection aims to provide practical tutorials and background information on important computational methods used to investigate key biological questions, as well as resources for training scientists at all stages of their careers.
The Benchmarking collection help readers decide between a number of methods which are developed to solve scientific problems.
Knowledge-guided analysis of "omics" data using the KnowEnG cloud platform
Test accuracy of polymerase chain reaction methods against conventional diagnostic techniques for Cutaneous Leishmaniasis (CL) in patients with clinical or epidemiological suspicion of CL: Systematic review and meta-analysis
Murine and related chapparvoviruses are nephro-tropic and produce novel accessory proteins in infected kidneys
Prevalence and genetic profiles of isoniazid resistance in tuberculosis patients: A multicountry analysis of cross-sectional data
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