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Genome analysis

Phylogenomic Analyses Support Traditional Relationships within Cnidaria

Felipe Zapata, Freya E. Goetz, [ ... ], Paulyn Cartwright

Tumor Transcriptome Sequencing Reveals Allelic Expression Imbalances Associated with Copy Number Alterations

Brian B. Tuch, Rebecca R. Laborde, [ ... ], David I. Smith

Variant Callers for Next-Generation Sequencing Data: A Comparison Study

Xiangtao Liu, Shizhong Han, [ ... ], Bao-Zhu Yang

BBMerge – Accurate paired shotgun read merging via overlap

Brian Bushnell, Jonathan Rood, Esther Singer

RNA Sequencing of the Human Milk Fat Layer Transcriptome Reveals Distinct Gene Expression Profiles at Three Stages of Lactation

Danielle G. Lemay, Olivia A. Ballard, [ ... ], Laurie A. Nommsen-Rivers

Gitools: Analysis and Visualisation of Genomic Data Using Interactive Heat-Maps

Christian Perez-Llamas, Nuria Lopez-Bigas

Compression of FASTQ and SAM Format Sequencing Data

James K. Bonfield, Matthew V. Mahoney

Genetics and Beyond – The Transcriptome of Human Monocytes and Disease Susceptibility

Tanja Zeller, Philipp Wild, [ ... ], François Cambien

Assembling the Marine Metagenome, One Cell at a Time

Tanja Woyke, Gary Xie, [ ... ], Ramunas Stepanauskas

MicroRNAs: Novel Regulators Involved in the Pathogenesis of Psoriasis?

Enikö Sonkoly, Tianling Wei, [ ... ], Andor Pivarcsi

Human and Chimpanzee Gene Expression Differences Replicated in Mice Fed Different Diets

Mehmet Somel, Hilliary Creely, [ ... ], Svante Pääbo

Comparative Evaluation of DNA Extraction Methods from Feces of Multiple Host Species for Downstream Next-Generation Sequencing

Marcia L. Hart, Alexandra Meyer, Philip J. Johnson, Aaron C. Ericsson

DNA Methylation of the First Exon Is Tightly Linked to Transcriptional Silencing

Fabienne Brenet, Michelle Moh, [ ... ], Joseph M. Scandura

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