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Genomics

An interpretable Hallmark pathway activity classifier for distinguishing CIN3/HSIL from invasive cervical squamous carcinoma: Development, external validation, and feature stability assessment

Mingyu Jia, Youyi Song, [ ... ], Mingzhu Ye

Machine Learning approaches for the detection of disease-causing variants in whole-genome data need to address the expression of functional genes

Camilla Mapstone, Julia Handl, David Talavera

Breastmilk microbiota and its association with infant iron deficiency anaemia: A 16S rRNA metagenomic study in Peruvian mothers cohort

Arturo Octavio Gonzales-Rodriguez, Luis Edgardo Gonzales-Huerta, [ ... ], Francesca Antonia Reale

Highly contiguous reference genome assembly of the endangered Orcés’ blue whiptail Holcosus orcesi

Gabriela Pozo, Diego F. Cisneros-Heredia, [ ... ], Maria de Lourdes Torres

Integrated transcriptomic profiling implicates MAPK14/p38α as a candidate shared molecular target at the sepsis–postoperative delirium interface with computational evidence for a losartan–MAPK14 association

Wei-Jia Kong, Jing-Xian Xue, [ ... ], Jiang-Tao Deng

Structural insights into the mosaic and modular organization of fourteen co-occurring resistance genes in multidrug resistant Enterobacteriaceae

Connor A. J. Rossel, Lieke B. van Alphen, Edou R. Heddema, Paul H. M. Savelkoul

Systems pharmacology reveals type I interferon and myeloid-like B cell reprogramming as candidate druggable axes in antiphospholipid syndrome

Bin Sun, Yiqiao Lu, Wei Liu, Chengze Wang

Revisiting differential expression analysis: An updated six-dimensional comparative study

Jianxiong Wu, Shaoke Lu, Hui Yao, Zhaoyuan Fang

Identification of candidate macrophage-ferroptosis crosstalk genes associated with immune infiltration in myocardial infarction: A bioinformatics analysis

Guoqin Wang, Zhulin Zhang, [ ... ], Shuang Guo

Transcriptome analysis of hepatopancreas of Litopenaeus vannamei after acute exposure to Alexandrium pacificum

Fuyuan Zeng, Haiming Chen, [ ... ], Yulei Zhang

First complete genome sequences and transcript expression profiling of tea plant necrotic ring blotch virus isolates from Iran

Fereshteh Esmaeilzadeh, Davoud Koolivand, Abozar Ghorbani

Diversity among isolates of Staphylococcus intermedius group from Pacific marine mammals of Southern California

Igor Loncaric, Lauren Palmer, [ ... ], Suzana Tkalcic

Driver mutation impact in Chinese hepatocellular carcinoma

Ruiheng Wu, Houmin Xing, Jeffrey P. Townsend

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