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Genomic libraries

Identification of transposable elements and satellite DNA in the Neotropical species Drosophila amaguana from the Ecuadorian Andean Forests

Manuel Alejandro Coba-Males, Simon Orozco-Arias, Romain Guyot, Doris Vela

FM3VCF: A software library for accelerating the loading of large VCF files in genotype data analyses

Zhen Zuo, Mingliang Li, [ ... ], You Tang

Optimized conditions for Listeria, Salmonella and Escherichia whole genome sequencing using the Illumina iSeq100 platform with point-and-click bioinformatic analysis

Sonsiray Alvarez Narvaez, Zhenyu Shen, [ ... ], Susan Sanchez

Proximal-end bias from in-vitro reconstituted nucleosomes and the result on downstream data analysis

David A. Bates, Charles E. Bates, [ ... ], Steven M. Johnson

Evaluating coverage bias in next-generation sequencing of Escherichia coli

Samantha Gunasekera, Sam Abraham, [ ... ], Mark O’Dea

Genomic and cDNA selection-amplification identifies transcriptome-wide binding sites for the Drosophila protein sex-lethal

Hiren Banerjee, Ravinder Singh

Choice of library preparation affects sequence quality, genome assembly, and precise in silico prediction of virulence genes in shiga toxin-producing Escherichia coli

Julie Haendiges, Karen Jinneman, Narjol Gonzalez-Escalona

Evaluating the number of different genomes in a metagenome by means of the compositional spectra approach

Valery Kirzhner, Dvora Toledano-Kitai, Zeev Volkovich

Non-invasive prenatal testing (NIPT) by low coverage genomic sequencing: Detection limits of screened chromosomal microdeletions

Marcel Kucharik, Andrej Gnip, [ ... ], Tomas Szemes

How “simple” methodological decisions affect interpretation of population structure based on reduced representation library DNA sequencing: A case study using the lake whitefish

Carly F. Graham, Douglas R. Boreham, [ ... ], Christopher M. Somers

Immunocapture of virions with virus-specific antibodies prior to high-throughput sequencing effectively enriches for virus-specific sequences

Dennis Knierim, Wulf Menzel, Stephan Winter

Imputation accuracy of wheat genotyping-by-sequencing (GBS) data using barley and wheat genome references

Hadi Alipour, Guihua Bai, [ ... ], Seyed Ali Peyghambari

Chinook salmon (Oncorhynchus tshawytscha) genome and transcriptome

Kris A. Christensen, Jong S. Leong, [ ... ], Robert H. Devlin

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