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Genome annotation

Composite selection signal analysis: Uncovering candidate genes and quantitative trait loci in Indian sheep breeds

Sapna Nath, Satish Kumar Illa, [ ... ], Vinod Kumar Yata

TSSpredator-Web: A web-application for transcription start site prediction and exploration

Mathias Witte Paz, Alexander Herbig, Kay Nieselt

Lessons learned from manual curation of thousands of gene models in the nematode Pristionchus pacificus

Christian Rödelsperger, Neha Agyal, [ ... ], Ralf J. Sommer

Genomic and phylogenomic exploration of Vibrio cholerae strain SU129B isolated from Penaeus vannamei: Resistance, virulence, and evolutionary dynamics in bangladeshi aquaculture

Mohammad Sharif Uddin, Kazi Chamonara, [ ... ], Sajedul Islam

Manual curation for improved genome annotation of the functionally extinct northern white rhinoceros (Ceratotherium simum cottoni)

Elena Ruggeri, Julien Prunier, [ ... ], Kristin Klohonatz

Beyond accuracy: Quantifying the reliability of multiple instance learning for whole slide image classification

Hassan Keshvarikhojasteh, Marc Aubreville, [ ... ], Mitko Veta

Bacimethrin, an allelopathic vitamin B₁ antagonist, is linked with microbial gene expression patterns in a hypereutrophic watershed

Kelly C. Shannon, Frederick S. Colwell, [ ... ], Christopher P. Suffridge

Whole genome sequencing, characterization and analysis of coronene degrading bacterial strain Halomonas elongata

Thasneema Rafic, Mohammed Alarawi, [ ... ], Alexis Nzila

Harnessing genetic diversity: The genomic and transcriptomic insights of Eugenia uniflora for environmental resilience

Isabel Cristina Cadavid Sánchez, Edgar L. Waschburger, [ ... ], Frank Lino Guzman Escudero

The genome of Gallaecimonas pentaromativorans strain 10A, isolated from a Pacific oyster, sheds light on an environmentally widespread genus with remarkable metabolic potential

Yasmine Gouin, Adam Wilcockson, [ ... ], Kevin Xu Zhong

Identification of genes that differentiate Mannheimia haemolytica genotypes 1 and 2 using a pangenome approach

Darien Deschner, Janet E. Hill

OpDetect: A convolutional and recurrent neural network classifier for precise and sensitive operon detection from RNA-seq data

Rezvan Karaji, Lourdes Peña-Castillo

Identification of differentially expressed genes and proteins related to diapause in Lymantria dispar: Insights for the mechanism of diapause from transcriptome and proteome analyses

Qing Xie, Xiaofan Ma, [ ... ], Yixia Cao

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