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Epigenomics

Recurrent enhancer-promoter interactions across samples

Matthew Weston, Satvik Gunjala, Haiyan Hu, Xiaoman Li

Predicting chromatin conformation contact maps

Alan Min, Jacob Schreiber, Anshul Kundaje, William S. Noble

Artificial intelligence and leukocyte epigenomics: Evaluation and prediction of late-onset Alzheimer’s disease

Ray O. Bahado-Singh, Sangeetha Vishweswaraiah, [ ... ], Uppala Radhakrishna

Predicting gene regulatory regions with a convolutional neural network for processing double-strand genome sequence information

Koh Onimaru, Osamu Nishimura, Shigehiro Kuraku

Exploring the overlap between rheumatoid arthritis susceptibility loci and long non-coding RNA annotations

James Ding, Chenfu Shi, [ ... ], Gisela Orozco

A deadline constrained scheduling algorithm for cloud computing system based on the driver of dynamic essential path

Xia Shao, Zhiqiang Xie, Yu Xin, Jing Yang

Enrichment of colorectal cancer associations in functional regions: Insight for using epigenomics data in the analysis of whole genome sequence-imputed GWAS data

Stephanie A. Bien, Paul L. Auer, [ ... ], on behalf of GECCO and CCFR

Accurate Promoter and Enhancer Identification in 127 ENCODE and Roadmap Epigenomics Cell Types and Tissues by GenoSTAN

Benedikt Zacher, Margaux Michel, [ ... ], Julien Gagneur

iFORM: Incorporating Find Occurrence of Regulatory Motifs

Chao Ren, Hebing Chen, [ ... ], Wenjie Shu

Extensive Association of Common Disease Variants with Regulatory Sequence

Michal Mokry, Magdalena Harakalova, [ ... ], Edward E. S. Nieuwenhuis

Tissue-Specific Enrichment of Lymphoma Risk Loci in Regulatory Elements

James E. Hayes, Gosia Trynka, [ ... ], Robert J. Klein

Integrative Analysis of Transcriptomic and Epigenomic Data to Reveal Regulation Patterns for BMD Variation

Ji-Gang Zhang, Li-Jun Tan, [ ... ], Hong-Wen Deng

ReadDepth: A Parallel R Package for Detecting Copy Number Alterations from Short Sequencing Reads

Christopher A. Miller, Oliver Hampton, Cristian Coarfa, Aleksandar Milosavljevic

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