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Metagenomics

Colorectal adenoma presence is associated with decreased menaquinone pathway functions in the gut microbiome of patients undergoing routine colonoscopy

Ilona Vilkoite, Ivars Silamiķelis, [ ... ], Laila Silamiķele

Shotgun metagenomic profiling reveals Bacillus-dominated bacterial communities in urban rooftop and surface garden soils of Bangladesh

M. Nazmul Hoque, Md. Liton Rana, [ ... ], Md. Tanvir Rahman

Development of a multiplex ddPCR assay for simultaneous absolute quantification of bacterial, fungal, and human DNA

Guohong Huang, Torrey L. Gallagher, Gregory J. Tsongalis, Joel A. Lefferts

Uncovering the hidden yeast diversity in fermented coffee: Insights from a shotgun metagenomic approach

Katherine Bedoya-Urrego, Aida Esther Peñuela-Martínez, Juan F. Alzate

Multi-modal data to identify key factors influencing lung injury in ARDS patients undergoing invasive mechanical ventilation: A prospective multi-center observational study protocol

Zhimei Duan, Di Lian, [ ... ], Zhihai Han

Centriflaken: An automated data analysis pipeline for assembly and in silico analyses of foodborne pathogens from metagenomic samples

Kranti Konganti, Julie A. Kase, Narjol Gonzalez-Escalona

Targeted virome deep sequencing reveals frequent herpesvirus detection in intestinal biopsies of inflammatory bowel disease patients

Jennifer-Natalia Vásquez, Pedro Doncel, [ ... ], David Tarragó

Picoplankton nitrogen guilds in the tropical and subtropical oceans: From the surface to the deep

Juan Rivas-Santisteban, Nuria Fernández-González, [ ... ], Carlos Pedrós-Alió

Metagenomic analysis reveals the abundance changes of bacterial communities and antibiotic resistance genes in the influent and effluent of hospital wastewater

Xu Jia, Jiaojiao Peng, [ ... ], Bin Han

Gut microbiome signatures in iNPH: Insights from a shotgun metagenomics study

Rahel Park, Claire Chevalier, [ ... ], Giovanni B. Frisoni

Exploring extreme environments in Türkiye for novel P450s through metagenomic analysis

Hande Mumcu, Julian Zaugg, [ ... ], Nevin Gul Karaguler

Plastispheres as reservoirs of antimicrobial resistance: Insights from metagenomic analyses across aquatic environments

Ingun Lund Witsø, Amulya Baral, [ ... ], Yngvild Wasteson

Evaluation of shotgun metagenomics as a diagnostic tool for infectious gastroenteritis

Kjersti Haugum, Anuradha Ravi, Jan Egil Afset, Christina Gabrielsen Ås

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