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Microbial genomics

Tumor microbial biodiversity and microsatellite instability in colorectal cancer

Calen Mendall, Meredith A. J. Hullar, [ ... ], Amanda I. Phipps

The parental intestinal microbiome modulates systemic and local glucocorticoid levels in neonatal mice

Jordan E. Hamden, Garrett Ainsworth-Cruickshank, [ ... ], Kiran K. Soma

A microbiome–metabolome signature associated with pediatric severe asthma

Mélanie Briard, Blanche Guillon, [ ... ], Vinciane Saint-Criq

Shotgun metagenomic profiling of the fecal microbiome in Lamp2 knockout mice reveals limited genotype-associated differences under standard housing

Maria Emfietzoglou, Maria Anna Bantounou, [ ... ], Demetrios G. Vavvas

A trainable language model with potential to modulate translation rates in non-model organisms by generating upstream untranslated region sequence libraries

Alexander D. Duggan, Matthew P. Newman, David R. McMillen

Detection of bacterial gene expression elements on Tobacco mosaic virus RNA using cDNA analysis

Yoshiyuki Nishimiya

‘PePApipe’: A complete bioinformatics analysis pipeline for African Swine Fever Virus genome

Vicente Lopez-Chavarrias, Irene Aldea, Jovita Fernández-Pinero

Codon bias variation in Staphylococcus aureus

Kathleen O’Connor, Benjamin D. Mallinger, Nicholas A. Bedard, Robin Patel

Accessible, robust ultrahigh-throughput microbiome analysis via integration of uniform droplet-templated emulsification and FACS

Wannes Nauwynck, Karoline Faust, Nico Boon

Comparative prevalence of the mercury resistance gene merA in human feces, food, and environmental water from Japan, Vietnam, and Ghana

Yen Hai Le, Judith Dzifa Azumah, [ ... ], Yoshimasa Yamamoto

Breastmilk microbiota and its association with infant iron deficiency anaemia: A 16S rRNA metagenomic study in Peruvian mothers cohort

Arturo Octavio Gonzales-Rodriguez, Luis Edgardo Gonzales-Huerta, [ ... ], Francesca Antonia Reale

First complete genome sequences and transcript expression profiling of tea plant necrotic ring blotch virus isolates from Iran

Fereshteh Esmaeilzadeh, Davoud Koolivand, Abozar Ghorbani

FusionPHI: A phage-host interaction prediction network model based on attention-driven multi-modal feature fusion

Xiangjun Li, Ruitao Li, Zhui Tu, Qingting Wei

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