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Genome annotation

Endosymbiont DNA in Endobacteria-Free Filarial Nematodes Indicates Ancient Horizontal Genetic Transfer

Samantha N. McNulty, Jeremy M. Foster, [ ... ], Peter U. Fischer

CODA: Accurate Detection of Functional Associations between Proteins in Eukaryotic Genomes Using Domain Fusion

Adam J. Reid, Juan A. G. Ranea, Andrew B. Clegg, Christine A. Orengo

Allelic Gene Structure Variations in Anopheles gambiae Mosquitoes

Jun Li, Jose M. C. Ribeiro, Guiyun Yan

Re-Annotation Is an Essential Step in Systems Biology Modeling of Functional Genomics Data

Bart H. J. van den Berg, Fiona M. McCarthy, Susan J. Lamont, Shane C. Burgess

TiArA: A Virtual Appliance for the Analysis of Tiling Array Data

Jason A. Greenbaum, Erika Assarsson, [ ... ], Bjoern Peters

Analysis of High-Throughput Sequencing and Annotation Strategies for Phage Genomes

Matthew R. Henn, Matthew B. Sullivan, [ ... ], Sallie W. Chisholm

ChIP-Chip Designs to Interrogate the Genome of Xenopus Embryos for Transcription Factor Binding and Epigenetic Regulation

Robert C. Akkers, Simon J. van Heeringen, [ ... ], Gert Jan C. Veenstra

Disease Gene Characterization through Large-Scale Co-Expression Analysis

Allen Day, Jun Dong, [ ... ], Stanley F. Nelson

Proteomic Detection of Non-Annotated Protein-Coding Genes in Pseudomonas fluorescens Pf0-1

Wook Kim, Mark W. Silby, [ ... ], Stuart B. Levy

Comparative Analysis of the Global Transcriptome of Anopheles funestus from Mali, West Africa

Andrew C. Serazin, Ali N. Dana, [ ... ], Nora J. Besansky

Probe-Level Analysis of Expression Microarrays Characterizes Isoform-Specific Degradation during Mouse Oocyte Maturation

Jesse Salisbury, Keith W. Hutchison, [ ... ], Joel H. Graber

Distinct Gene Number-Genome Size Relationships for Eukaryotes and Non-Eukaryotes: Gene Content Estimation for Dinoflagellate Genomes

Yubo Hou, Senjie Lin

Local Network Topology in Human Protein Interaction Data Predicts Functional Association

Hua Li, Shoudan Liang

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