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Genome annotation

More than 9,000,000 Unique Genes in Human Gut Bacterial Community: Estimating Gene Numbers Inside a Human Body

Xing Yang, Lu Xie, Yixue Li, Chaochun Wei

Custom Design and Analysis of High-Density Oligonucleotide Bacterial Tiling Microarrays

Gard O. S. Thomassen, Alexander D. Rowe, [ ... ], Torbjørn Rognes

Functional Equivalency Inferred from “Authoritative Sources” in Networks of Homologous Proteins

Shreedhar Natarajan, Eric Jakobsson

Rapid Annotation of Anonymous Sequences from Genome Projects Using Semantic Similarities and a Weighting Scheme in Gene Ontology

Paolo Fontana, Alessandro Cestaro, [ ... ], Stefano Toppo

Consistency Analysis of Redundant Probe Sets on Affymetrix Three-Prime Expression Arrays and Applications to Differential mRNA Processing

Xiangqin Cui, Ann E. Loraine

Intergenic and Genic Sequence Lengths Have Opposite Relationships with Respect to Gene Expression

Juliette Colinas, Scott C. Schmidler, [ ... ], Philip N. Benfey

Refinement of Light-Responsive Transcript Lists Using Rice Oligonucleotide Arrays: Evaluation of Gene-Redundancy

Ki-Hong Jung, Christopher Dardick, [ ... ], Pamela C. Ronald

High-Throughput, Kingdom-Wide Prediction and Annotation of Bacterial Non-Coding RNAs

Jonathan Livny, Hidayat Teonadi, Miron Livny, Matthew K. Waldor

Longer First Introns Are a General Property of Eukaryotic Gene Structure

Keith R. Bradnam, Ian Korf

Improved Elucidation of Biological Processes Linked to Diabetic Nephropathy by Single Probe-Based Microarray Data Analysis

Clemens D. Cohen, Maja T. Lindenmeyer, [ ... ], Peter J. Nelson

Identify Alternative Splicing Events Based on Position-Specific Evolutionary Conservation

Liang Chen, Sika Zheng

Functional Annotation and Identification of Candidate Disease Genes by Computational Analysis of Normal Tissue Gene Expression Data

Laura Miozzi, Rosario Michael Piro, [ ... ], Paolo Provero

Alternative Promoters Influence Alternative Splicing at the Genomic Level

Dedong Xin, Landian Hu, Xiangyin Kong

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