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Genome annotation

A Gross Anatomy Ontology for Hymenoptera

Matthew J. Yoder, István Mikó, [ ... ], Andrew R. Deans

Tiling Array Analysis of UV Treated Escherichia coli Predicts Novel Differentially Expressed Small Peptides

Gard O. S. Thomassen, Ragnhild Weel-Sneve, [ ... ], Torbjørn Rognes

Natural Variation of the Amino-Terminal Glutamine-Rich Domain in Drosophila Argonaute2 Is Not Associated with Developmental Defects

Daniel Hain, Brian R. Bettencourt, [ ... ], H.-Arno J. Müller

A Dual Platform Approach to Transcript Discovery for the Planarian Schmidtea Mediterranea to Establish RNAseq for Stem Cell and Regeneration Biology

Martin J. Blythe, Damian Kao, [ ... ], A. Aziz Aboobaker

Accurate Protein Structure Annotation through Competitive Diffusion of Enzymatic Functions over a Network of Local Evolutionary Similarities

Eric Venner, Andreas Martin Lisewski, [ ... ], Olivier Lichtarge

Design, Validation and Annotation of Transcriptome-Wide Oligonucleotide Probes for the Oligochaete Annelid Eisenia fetida

Ping Gong, Mehdi Pirooznia, Xin Guan, Edward J. Perkins

Characterization of the Small RNA Transcriptomes of Androgen Dependent and Independent Prostate Cancer Cell Line by Deep Sequencing

Gang Xu, Jinyu Wu, [ ... ], Zhihua Tao

High Sensitivity TSS Prediction: Estimates of Locations Where TSS Cannot Occur

Ulf Schaefer, Rimantas Kodzius, [ ... ], Vladimir B. Bajic

GOPred: GO Molecular Function Prediction by Combined Classifiers

Ömer Sinan Saraç, Volkan Atalay, Rengul Cetin-Atalay

Exploring the Genetic Basis of Variation in Gene Predictions with a Synthetic Association Study

Tera C. Levin, Andrew M. Glazer, [ ... ], Michael B. Eisen

Large-Scale Evidence for Conservation of NMD Candidature Across Mammals

David A. de Lima Morais, Paul M. Harrison

MER41 Repeat Sequences Contain Inducible STAT1 Binding Sites

Christoph D. Schmid, Philipp Bucher

Using Deep RNA Sequencing for the Structural Annotation of the Laccaria Bicolor Mycorrhizal Transcriptome

Peter E. Larsen, Geetika Trivedi, [ ... ], Frank R. Collart

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