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Genome annotation

De-Orphaning the Structural Proteome through Reciprocal Comparison of Evolutionarily Important Structural Features

R. Matthew Ward, Serkan Erdin, [ ... ], Olivier Lichtarge

Comparative Analysis of Acinetobacters: Three Genomes for Three Lifestyles

David Vallenet, Patrice Nordmann, [ ... ], Stéphane Cruveiller

Protein Function Assignment through Mining Cross-Species Protein-Protein Interactions

Xue-wen Chen, Mei Liu, Robert Ward

Gene Characterization Index: Assessing the Depth of Gene Annotation

Danielle Kemmer, Raf M. Podowski, [ ... ], Wyeth W. Wasserman

An Improved, Bias-Reduced Probabilistic Functional Gene Network of Baker's Yeast, Saccharomyces cerevisiae

Insuk Lee, Zhihua Li, Edward M. Marcotte

Modeling Insertional Mutagenesis Using Gene Length and Expression in Murine Embryonic Stem Cells

Alex S. Nord, Karen Vranizan, [ ... ], Bruce R. Conklin

A Full-Genomic Sequence-Verified Protein-Coding Gene Collection for Francisella tularensis

Tal Murthy, Andreas Rolfs, [ ... ], Joshua LaBaer

Probabilistic Protein Function Prediction from Heterogeneous Genome-Wide Data

Naoki Nariai, Eric D. Kolaczyk, Simon Kasif

Large-Scale Comparative Genomic Ranking of Taxonomically Restricted Genes (TRGs) in Bacterial and Archaeal Genomes

Gareth A. Wilson, Edward J. Feil, Andrew K. Lilley, Dawn Field

Global Identification and Characterization of Transcriptionally Active Regions in the Rice Genome

Lei Li, Xiangfeng Wang, [ ... ], Xing Wang Deng

The Evolution of Mammalian Gene Families

Jeffery P. Demuth, Tijl De Bie, [ ... ], Matthew W. Hahn

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