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Genome annotation

Identification of AC025811.3 and AC012354.6 as two critical survival-related lncRNAs for uterine corpus cancer

Lu Pu, Rui Ou, Zhaomin Deng, Hao Jiang

published 12 Jun 2026

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ViralMultiNet: A structure-aware multimodal framework for viral protein function prediction in wastewater surveillance

FuGuo Liu, TingLian Lai, WenXia Xu, GuoDong Li

published 03 Jun 2026

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Genomic and functional characterization of a novel halophilic bacteriophage targeting carbapenem-resistant Klebsiella pneumoniae

Sahar Abed, Masoumeh Beig, Sepideh Soltani, Mohadeseh Pahlevani, Peter Speck, Morvarid Shafiei, Abdolrazagh Hashemi Shahraki, Abozar Ghorbani

published 28 May 2026

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Analyzing the performance of deep learning splice prediction algorithms

Nathan Fortier, Gabe Rudy, Andreas Scherer

published 13 May 2026

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Complete genome and functional insights into Microbacterium sp. strain FBCC-B4120, a novel freshwater isolate with diverse biotechnological traits

Jina Kim, Hyaekang Kim, Jaeduk Goh, Chun-Zhi Jin, Hyung-Gwan Lee, Chang Soo Lee, Sanghwa Park, Eu Jin Chung, Yejin Park, Seungmin Shin, Youngmin Han, Woori Kwak

published 07 May 2026

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Integration of a neuronal RNAseq dataset with the draft Gryllus bimaculatus transcriptome refines gene predictions and highlights potential systematic response to injury

Felicia F. Wang, Harrison P. Fisher, Lisa M. Ledwidge, Joel H. Graber, Riley A. Grindle, Jarod A. Rollins, Hadley W. Horch

published 29 Apr 2026

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GermVarX: A Robust Workflow for Joint Germline Variant Exploration in whole-exome sequencing cohorts

Thao Thi Phuong Nguyen, Dung Duc Nguyen, Thuy Van Mai, Dung Khoi Nguyen, Tung Dang Nguyen, Ngoc Thi Minh Truong, Hanh Hong Ha, Trang Thi Ha Tran

published 02 Apr 2026

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Composite selection signal analysis: Uncovering candidate genes and quantitative trait loci in Indian sheep breeds

Sapna Nath, Satish Kumar Illa, Destaw Worku, Sabyasachi Mukherjee, Anupama Mukherjee, Vinod Kumar Yata

published 25 Mar 2026

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TSSpredator-Web: A web-application for transcription start site prediction and exploration

Mathias Witte Paz, Alexander Herbig, Kay Nieselt

published 13 Mar 2026

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Lessons learned from manual curation of thousands of gene models in the nematode Pristionchus pacificus

Christian Rödelsperger, Neha Agyal, Shiela Pearl Quiobe, Hao Wu, Waltraud Röseler, Dafne Ibarra-Morales, Ralf J. Sommer

published 12 Mar 2026

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Genomic and phylogenomic exploration of Vibrio cholerae strain SU129B isolated from Penaeus vannamei: Resistance, virulence, and evolutionary dynamics in bangladeshi aquaculture

Mohammad Sharif Uddin, Kazi Chamonara, Md. Habib Ullah Masum, Afifa Siddiqua, Imam Hossain, Sumaia Sultana, Sajedul Islam

published 10 Mar 2026

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Manual curation for improved genome annotation of the functionally extinct northern white rhinoceros (Ceratotherium simum cottoni)

Elena Ruggeri, Julien Prunier, Marc-André Sirard, Barbara Durrant, Kristin Klohonatz

published 05 Jan 2026

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Beyond accuracy: Quantifying the reliability of multiple instance learning for whole slide image classification

Hassan Keshvarikhojasteh, Marc Aubreville, Christof A. Bertram, Josien P. W. Pluim, Mitko Veta

published 05 Dec 2025

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