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Genome annotation

Identification of AC025811.3 and AC012354.6 as two critical survival-related lncRNAs for uterine corpus cancer

Lu Pu, Rui Ou, Zhaomin Deng, Hao Jiang

ViralMultiNet: A structure-aware multimodal framework for viral protein function prediction in wastewater surveillance

FuGuo Liu, TingLian Lai, WenXia Xu, GuoDong Li

Genomic and functional characterization of a novel halophilic bacteriophage targeting carbapenem-resistant Klebsiella pneumoniae

Sahar Abed, Masoumeh Beig, [ ... ], Abozar Ghorbani

Analyzing the performance of deep learning splice prediction algorithms

Nathan Fortier, Gabe Rudy, Andreas Scherer

Complete genome and functional insights into Microbacterium sp. strain FBCC-B4120, a novel freshwater isolate with diverse biotechnological traits

Jina Kim, Hyaekang Kim, [ ... ], Woori Kwak

Integration of a neuronal RNAseq dataset with the draft Gryllus bimaculatus transcriptome refines gene predictions and highlights potential systematic response to injury

Felicia F. Wang, Harrison P. Fisher, [ ... ], Hadley W. Horch

GermVarX: A Robust Workflow for Joint Germline Variant Exploration in whole-exome sequencing cohorts

Thao Thi Phuong Nguyen, Dung Duc Nguyen, [ ... ], Trang Thi Ha Tran

Composite selection signal analysis: Uncovering candidate genes and quantitative trait loci in Indian sheep breeds

Sapna Nath, Satish Kumar Illa, [ ... ], Vinod Kumar Yata

TSSpredator-Web: A web-application for transcription start site prediction and exploration

Mathias Witte Paz, Alexander Herbig, Kay Nieselt

Lessons learned from manual curation of thousands of gene models in the nematode Pristionchus pacificus

Christian Rödelsperger, Neha Agyal, [ ... ], Ralf J. Sommer

Genomic and phylogenomic exploration of Vibrio cholerae strain SU129B isolated from Penaeus vannamei: Resistance, virulence, and evolutionary dynamics in bangladeshi aquaculture

Mohammad Sharif Uddin, Kazi Chamonara, [ ... ], Sajedul Islam

Manual curation for improved genome annotation of the functionally extinct northern white rhinoceros (Ceratotherium simum cottoni)

Elena Ruggeri, Julien Prunier, [ ... ], Kristin Klohonatz

Beyond accuracy: Quantifying the reliability of multiple instance learning for whole slide image classification

Hassan Keshvarikhojasteh, Marc Aubreville, [ ... ], Mitko Veta

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