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Genome analysis

Tumor hypoxia is associated with global copy-number alteration burden and subtype-dependent overall survival in breast cancer: Evidence from TCGA and METABRIC

Wenhan Yang

Types of genotypes in progressive familial intrahepatic cholestasis and liver transplantation: A meta-analysis of observational studies

Rania Sakka, Hela Abroug, [ ... ], Ridha M’rad

AgrOmicSo: A client-server interface for accessible large-scale analysis of next-generation sequencing data

Dong-Jun Lee, Tae-Ho Lee, Taesoo Kwon

Phage-plasmid-like elements are found throughout diverse environments and encode niche-specific functional traits

James I. Mullet, Liqing Zhang, Amy Pruden, Connor L. Brown

Temporal transcriptomic profiling of pulmonary thromboembolism reveals persistent NETosis- and ferroptosis-associated gene signatures and enhanced thrombolysis with adjunctive DNase I

Jialun Chen, Lingshan Chao, [ ... ], Xixin Yan

GSEA and the coexpression network approach identify novel pathway connections of molecular processes affected in Porto-sinusoidal vascular disease

Aishwarya Iyer, Cenna Doornbos, [ ... ], Friederike Ehrhart

Virological investigation and comparative genomic analysis of elephant endotheliotropic herpesvirus 1B infection in an Australian captive herd of Asian elephants (Elephas maximus)

Jack W. Wheelahan, Paola K. Vaz, [ ... ], Joanne M. Devlin

Genomic and functional characterization of a novel halophilic bacteriophage targeting carbapenem-resistant Klebsiella pneumoniae

Sahar Abed, Masoumeh Beig, [ ... ], Abozar Ghorbani

Local genetic correlations between systemic sclerosis and common cancer types

Karina Patasova, Weng Ian Che, [ ... ], Marie Holmqvist

Transcriptomic and metabolomic analysis of allelopathic responses in Elymus nutans

Huiyun Yu, Xingming Liu, [ ... ], Jie Zhang

Integrative transcriptomic analysis identifies immune-associated candidate genes and altered immune cell infiltration in pulmonary arterial hypertension

Xitong Yang, Bin Zhou, [ ... ], Xinhua Wu

Molecular and structural reprogramming of gastric cancer revealed by systems-level transcriptomic analysis

Negar Mottaghi-Dastjerdi, Mohammad Soltany-Rezaee-Rad

Large-scale cryptic proteome mining revealed potential phage-mediated host-pathogen genetic exchange in Mycobacterium tuberculosis

Nikhil Bhalla, Nupur Angrish

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