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Genome analysis

Human and Murine Kidneys Show Gender- and Species-Specific Gene Expression Differences in Response to Injury

Han Si, Ramandeep S. Banga, Pinelopi Kapitsinou, Manjunath Ramaiah, Janis Lawrence, Ganesh Kambhampati, Antje Gruenwald, Erwin Bottinger, Daniel Glicklich, Vivian Tellis, Stuart Greenstein, David B. Thomas, James Pullman, Melissa Fazzari, Katalin Susztak

published 11 Mar 2009

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Dissecting Nucleosome Free Regions by a Segmental Semi-Markov Model

Wei Sun, Wei Xie, Feng Xu, Michael Grunstein, Ker-Chau Li

published 06 Mar 2009

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Genome-Wide and Candidate Gene Association Study of Cigarette Smoking Behaviors

Neil Caporaso, Fangyi Gu, Nilanjan Chatterjee, Jin Sheng-Chih, Kai Yu, Meredith Yeager, Constance Chen, Kevin Jacobs, William Wheeler, Maria Teresa Landi, Regina G. Ziegler, David J. Hunter, Stephen Chanock, Susan Hankinson, Peter Kraft, Andrew W. Bergen

published 27 Feb 2009

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Rapid Annotation of Anonymous Sequences from Genome Projects Using Semantic Similarities and a Weighting Scheme in Gene Ontology

Paolo Fontana, Alessandro Cestaro, Riccardo Velasco, Elide Formentin, Stefano Toppo

published 27 Feb 2009

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Identification of Thyroid Hormone Receptor Binding Sites and Target Genes Using ChIP-on-Chip in Developing Mouse Cerebellum

Hongyan Dong, Carole L. Yauk, Andrea Rowan-Carroll, Seo-Hee You, R. Thomas Zoeller, Iain Lambert, Michael G. Wade

published 25 Feb 2009

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PPI Finder: A Mining Tool for Human Protein-Protein Interactions

Min He, Yi Wang, Wei Li

published 23 Feb 2009

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Cross-Study Projections of Genomic Biomarkers: An Evaluation in Cancer Genomics

Joseph E. Lucas, Carlos M. Carvalho, Julia Ling-Yu Chen, Jen-Tsan Chi, Mike West

published 19 Feb 2009

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Query Large Scale Microarray Compendium Datasets Using a Model-Based Bayesian Approach with Variable Selection

Ming Hu, Zhaohui S. Qin

published 13 Feb 2009

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Detection of Gene Expression in an Individual Cell Type within a Cell Mixture Using Microarray Analysis

Penelope A. Bryant, Gordon K. Smyth, Roy Robins-Browne, Nigel Curtis

published 12 Feb 2009

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Microarray Analyses of Gene Expression during the Tetrahymena thermophila Life Cycle

Wei Miao, Jie Xiong, Josephine Bowen, Wei Wang, Yifan Liu, Olga Braguinets, Jorg Grigull, Ronald E. Pearlman, Eduardo Orias, Martin A. Gorovsky

published 10 Feb 2009

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On the Evolution of the Standard Genetic Code: Vestiges of Critical Scale Invariance from the RNA World in Current Prokaryote Genomes

Marco V. José, Tzipe Govezensky, José A. García, Juan R. Bobadilla

published 02 Feb 2009

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Consistency Analysis of Redundant Probe Sets on Affymetrix Three-Prime Expression Arrays and Applications to Differential mRNA Processing

Xiangqin Cui, Ann E. Loraine

published 23 Jan 2009

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Full Sequence and Comparative Analysis of the Plasmid pAPEC-1 of Avian Pathogenic E. coli χ7122 (O78∶K80∶H9)

Melha Mellata, Jeffrey W. Touchman, Roy Curtiss III

published 21 Jan 2009

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