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Genome analysis

Emergent Genome-Wide Control in Wildtype and Genetically Mutated Lipopolysaccarides-Stimulated Macrophages

Masa Tsuchiya, Vincent Piras, [ ... ], Kumar Selvarajoo

Clique-Finding for Heterogeneity and Multidimensionality in Biomarker Epidemiology Research: The CHAMBER Algorithm

Richard A. Mushlin, Stephen Gallagher, Aaron Kershenbaum, Timothy R. Rebbeck

Human and Murine Kidneys Show Gender- and Species-Specific Gene Expression Differences in Response to Injury

Han Si, Ramandeep S. Banga, [ ... ], Katalin Susztak

Dissecting Nucleosome Free Regions by a Segmental Semi-Markov Model

Wei Sun, Wei Xie, [ ... ], Ker-Chau Li

Genome-Wide and Candidate Gene Association Study of Cigarette Smoking Behaviors

Neil Caporaso, Fangyi Gu, [ ... ], Andrew W. Bergen

Rapid Annotation of Anonymous Sequences from Genome Projects Using Semantic Similarities and a Weighting Scheme in Gene Ontology

Paolo Fontana, Alessandro Cestaro, [ ... ], Stefano Toppo

Identification of Thyroid Hormone Receptor Binding Sites and Target Genes Using ChIP-on-Chip in Developing Mouse Cerebellum

Hongyan Dong, Carole L. Yauk, [ ... ], Michael G. Wade

PPI Finder: A Mining Tool for Human Protein-Protein Interactions

Min He, Yi Wang, Wei Li

Cross-Study Projections of Genomic Biomarkers: An Evaluation in Cancer Genomics

Joseph E. Lucas, Carlos M. Carvalho, [ ... ], Mike West

Query Large Scale Microarray Compendium Datasets Using a Model-Based Bayesian Approach with Variable Selection

Ming Hu, Zhaohui S. Qin

Detection of Gene Expression in an Individual Cell Type within a Cell Mixture Using Microarray Analysis

Penelope A. Bryant, Gordon K. Smyth, Roy Robins-Browne, Nigel Curtis

Microarray Analyses of Gene Expression during the Tetrahymena thermophila Life Cycle

Wei Miao, Jie Xiong, [ ... ], Martin A. Gorovsky

On the Evolution of the Standard Genetic Code: Vestiges of Critical Scale Invariance from the RNA World in Current Prokaryote Genomes

Marco V. José, Tzipe Govezensky, José A. García, Juan R. Bobadilla

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