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Genome analysis

Different disease inoculations cause common responses of the host immune system and prokaryotic component of the microbiome in Acropora palmata

Benjamin D. Young, Stephanie M. Rosales, Ian C. Enochs, Graham Kolodziej, Nathan Formel, Amelia Moura, Gabrielle L. D’Alonso, Nikki Traylor-Knowles

published 25 May 2023

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Hierarchical association of COPD to principal genetic components of biological systems

Daniel E. Carlin, Simon J. Larsen, Vikram Sirupurapu, Michael H. Cho, Edwin K. Silverman, Jan Baumbach, Trey Ideker

published 25 May 2023

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Differences in the 3’ intergenic region and the V2 protein of two sequence variants of tomato curly stunt virus play an important role in disease pathology in Nicotiana benthamiana

Alexander M. Zwolinski, Alison Brigden, Marie E. C. Rey

published 23 May 2023

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Plasma proteome perturbation for CMV DNAemia in kidney transplantation

Tara K. Sigdel, Patrick Boada, Maggie Kerwin, Priyanka Rashmi, David Gjertson, Maura Rossetti, Swastika Sur, Dane Munar, James Cimino, Richard Ahn, Harry Pickering, Subha Sen, Rajesh Parmar, Benoit Fatou, Hanno Steen, Joanna Schaenman, Suphamai Bunnapradist, Elaine F. Reed, Minnie M. Sarwal, CMV Systems Immunobiology Group

published 19 May 2023

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Large genomic deletions delineate Mycobacterium tuberculosis L4 sublineages in South American countries

Andres Baena, Felipe Cabarcas, Juan C. Ocampo, Luis F. Barrera, Juan F. Alzate

published 19 May 2023

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Mice lacking Ptprd exhibit deficits in goal-directed behavior and female-specific impairments in sensorimotor gating

Emily V. Ho, Amanda Welch, Summer L. Thompson, James A. Knowles, Stephanie C. Dulawa

published 19 May 2023

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Unsupervised machine learning framework for discriminating major variants of concern during COVID-19

Rohitash Chandra, Chaarvi Bansal, Mingyue Kang, Tom Blau, Vinti Agarwal, Pranjal Singh, Laurence O. W. Wilson, Seshadri Vasan

published 18 May 2023

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Genome-wide association mapping for component traits of drought tolerance in dry beans (Phaseolus vulgaris L.)

Bruce Mutari, Julia Sibiya, Admire Shayanowako, Charity Chidzanga, Prince M. Matova, Edmore Gasura

published 18 May 2023

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A network causal relationship between type-1 diabetes mellitus, 25-hydroxyvitamin D level and systemic lupus erythematosus: Mendelian randomization study

Kaisheng Su, Zhifang Jia, Yanhua Wu, Yuanlin Sun, Qi Gao, Zhenyu Jiang, Jing Jiang

published 17 May 2023

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PIK3CA mutations in breast cancer: A Tunisian series

Mariem Ben Rekaya, Farah Sassi, Essya Saied, Linda Bel Haj Kacem, Nada Mansouri, Sinda Zarrouk, Saifeddine Azouz, Soumaya Rammeh

published 17 May 2023

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Multi-ancestry genome- and phenome-wide association studies of diverticular disease in electronic health records with natural language processing enriched phenotyping algorithm

Yoonjung Yoonie Joo, Jennifer A. Pacheco, William K. Thompson, Laura J. Rasmussen-Torvik, Luke V. Rasmussen, Frederick T. J. Lin, Mariza de Andrade, Kenneth M. Borthwick, Erwin Bottinger, Andrew Cagan, David S. Carrell, Joshua C. Denny, Stephen B. Ellis, Omri Gottesman, James G. Linneman, Jyotishman Pathak, Peggy L. Peissig, Ning Shang, Gerard Tromp, Annapoorani Veerappan, Maureen E. Smith, Rex L. Chisholm, Andrew J. Gawron, M. Geoffrey Hayes, Abel N. Kho

published 17 May 2023

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Chromosome-scale genome sequence assemblies of the ‘Autumn Bliss’ and ‘Malling Jewel’ cultivars of the highly heterozygous red raspberry (Rubus idaeus L.) derived from long-read Oxford Nanopore sequence data

R. Jordan Price, Jahn Davik, Felicidad Fernandéz Fernandéz, Helen J. Bates, Samantha Lynn, Charlotte F. Nellist, Matteo Buti, Dag Røen, Nada Šurbanovski, Muath Alsheikh, Richard J. Harrison, Daniel James Sargent

published 16 May 2023

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Comparative genomic analysis of Methylocystis sp. MJC1 as a platform strain for polyhydroxybutyrate biosynthesis

Sanzhar Naizabekov, Seung Woon Hyun, Jeong-Geol Na, Sukhwan Yoon, Ok Kyung Lee, Eun Yeol Lee

published 10 May 2023

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