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Genome analysis

A Genome-Wide Investigation of Expression Characteristics of Natural Antisense Transcripts in Liver and Muscle Samples of Pigs

Congying Chen, Rongxing Wei, Ruimin Qiao, Jun Ren, Hui Yang, Chenlong Liu, Lusheng Huang

published 20 Dec 2012

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Cell-Type Specific DNA Methylation Patterns Define Human Breast Cellular Identity

Petr Novak, Martha R. Stampfer, Jose L. Munoz-Rodriguez, James C. Garbe, Mathias Ehrich, Bernard W. Futscher, Taylor J. Jensen

published 20 Dec 2012

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Enhancer Chip: Detecting Human Copy Number Variations in Regulatory Elements

Marco Savarese, Giulio Piluso, Daniela Orteschi, Giuseppina Di Fruscio, Manuela Dionisi, Francesca del Vecchio Blanco, Annalaura Torella, Teresa Giugliano, Michele Iacomino, Marcella Zollino, Giovanni Neri, Vincenzo Nigro

published 20 Dec 2012

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HTS-PEG: A Method for High Throughput Sequencing of the Paired-Ends of Genomic Libraries

Sisi Zhou, Yonggui Fu, Jie Li, Lingyu He, Xingsheng Cai, Qingyu Yan, Xingqiang Rao, Shengfeng Huang, Guang Li, Yiquan Wang, Anlong Xu

published 20 Dec 2012

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FastUniq: A Fast De Novo Duplicates Removal Tool for Paired Short Reads

Haibin Xu, Xiang Luo, Jun Qian, Xiaohui Pang, Jingyuan Song, Guangrui Qian, Jinhui Chen, Shilin Chen

published 20 Dec 2012

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Distinct SNP Combinations Confer Susceptibility to Urinary Bladder Cancer in Smokers and Non-Smokers

Holger Schwender, Silvia Selinski, Meinolf Blaszkewicz, Rosemarie Marchan, Katja Ickstadt, Klaus Golka, Jan G. Hengstler

published 20 Dec 2012

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Different Transcriptional Profiles of RAW264.7 Infected with Mycobacterium tuberculosis H37Rv and BCG Identified via Deep Sequencing

Fengguang Pan, Yaya Zhao, Seng Zhu, Changjiang Sun, Liancheng Lei, Xin Feng, Wen yu Han

published 19 Dec 2012

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Genome-Wide Discovery of Small RNAs in Mycobacterium tuberculosis

Paolo Miotto, Francesca Forti, Alessandro Ambrosi, Danilo Pellin, Diogo F. Veiga, Gabor Balazsi, Maria L. Gennaro, Clelia Di Serio, Daniela Ghisotti, Daniela M. Cirillo

published 19 Dec 2012

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Estimation of Copy Number Alterations from Exome Sequencing Data

Rafael Valdés-Mas, Silvia Bea, Diana A. Puente, Carlos López-Otín, Xose S. Puente

published 19 Dec 2012

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COPS: Detecting Co-Occurrence and Spatial Arrangement of Transcription Factor Binding Motifs in Genome-Wide Datasets

Nati Ha, Maria Polychronidou, Ingrid Lohmann

published 18 Dec 2012

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Prospective Transcriptomic Pathway Analysis of Human Lymphatic Vascular Insufficiency: Identification and Validation of a Circulating Biomarker Panel

Shin Lin, Jeanna Kim, Mi-Joung Lee, Leslie Roche, Nancy L. Yang, Philip S. Tsao, Stanley G. Rockson

published 18 Dec 2012

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Sex Differences in Genetic Architecture of Complex Phenotypes?

Jacqueline M. Vink, Meike Bartels, Toos C. E. M. van Beijsterveldt, Jenny van Dongen, Jenny H. D. A. van Beek, Marijn A. Distel, Marleen H. M. de Moor, Dirk J. A. Smit, Camelia C. Minica, Lannie Ligthart, Lot M. Geels, Abdel Abdellaoui, Christel M. Middeldorp, Jouke Jan Hottenga, Gonneke Willemsen, Eco J. C. de Geus, Dorret I. Boomsma

published 18 Dec 2012

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Using Family-Based Imputation in Genome-Wide Association Studies with Large Complex Pedigrees: The Framingham Heart Study

Ming-Huei Chen, Jie Huang, Wei-Min Chen, Martin G. Larson, Caroline S. Fox, Ramachandran S. Vasan, Sudha Seshadri, Christopher J. O’Donnell, Qiong Yang

published 17 Dec 2012

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