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Genome analysis

Addressing overlapping sample challenges in genome-wide association studies: Meta-reductive approach

Farid Rajabli, Azra Emekci

published 01 Aug 2024

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Causal relationship between gut microbiota and ankylosing spondylitis and potential mediating role of inflammatory cytokines: A mendelian randomization study

Xinyu Du, Haibo Li, Hongzhou Zhao, Shuangshuang Cui, Xiaozhuo Sun, Xiaochan Tan

published 31 Jul 2024

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Reclassification of Botryococcus braunii chemical races into separate species based on a comparative genomics analysis

Devon J. Boland, Ivette Cornejo-Corona, Daniel R. Browne, Rebecca L. Murphy, John Mullet, Shigeru Okada, Timothy P. Devarenne

published 29 Jul 2024

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Genome wide association study of clinical duration and age at onset of sporadic CJD

Holger Hummerich, Helen Speedy, Tracy Campbell, Lee Darwent, Elizabeth Hill, Steven Collins, Christiane Stehmann, Gabor G. Kovacs, Michael D. Geschwind, Karl Frontzek, Herbert Budka, Ellen Gelpi, Adriano Aguzzi, Sven J. van der Lee, Cornelia M. van Duijn, Pawel P. Liberski, Miguel Calero, Pascual Sanchez-Juan, Elodie Bouaziz-Amar, Jean-Louis Laplanche, Stéphane Haïk, Jean-Phillipe Brandel, Angela Mammana, Sabina Capellari, Anna Poleggi, Anna Ladogana, Maurizio Pocchiari, Saima Zafar, Stephanie Booth, Gerard H. Jansen, Aušrinė Areškevičiūtė, Eva Løbner Lund, Katie Glisic, Piero Parchi, Peter Hermann, Inga Zerr, Brian S. Appleby, Jiri Safar, Pierluigi Gambetti, John Collinge, Simon Mead

published 26 Jul 2024

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Variant calling and genotyping accuracy of ddRAD-seq: Comparison with 20X WGS in layers

Mathilde Doublet, Fabien Degalez, Sandrine Lagarrigue, Laetitia Lagoutte, Elise Gueret, Sophie Allais, Frédéric Lecerf

published 26 Jul 2024

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Spatial transcriptomic profiling of isolated microregions in tissue sections utilizing laser-induced forward transfer

Kaiqiang Ye, Wanqing Chang, Jitao Xu, Yunxia Guo, Qingyang Qin, Kaitong Dang, Xiaofeng Han, Xiaolei Zhu, Qinyu Ge, Qiannan Cui, Yun Xu, Xiangwei Zhao

published 25 Jul 2024

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Pangenome and genomic signatures linked to the dominance of the lineage-4 of Mycobacterium tuberculosis isolated from extrapulmonary tuberculosis patients in western Ethiopia

Basha Chekesa, Harinder Singh, Norberto Gonzalez-Juarbe, Sanjay Vashee, Rosana Wiscovitch-Russo, Christopher L. Dupont, Musse Girma, Oudessa Kerro, Balako Gumi, Gobena Ameni

published 25 Jul 2024

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Combined metabolomics and transcriptomics reveal the secondary metabolite networks in different growth stages of Bletilla striata (Thunb.) Reichb.f.

Man Chen, Xia Wang, Yueyu Ye, Xiaomei Li, Shiqing Li, Meiya Li, Fusheng Jiang, Chunchun Zhang

published 24 Jul 2024

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A subpopulation of human bone marrow erythroid cells displays a myeloid gene expression signature similar to that of classic monocytes

Roman Perik-Zavodskii, Olga Perik-Zavodskaia, Julia Shevchenko, Marina Volynets, Saleh Alrhmoun, Kirill Nazarov, Vera Denisova, Sergey Sennikov

published 22 Jul 2024

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Chemical mutagenesis of Listeria monocytogenes for increased tolerance to benzalkonium chloride shows independent genetic underpinnings and off-target antibiotic resistance

Tyler D. Bechtel, Julia Hershelman, Mrinalini Ghoshal, Lynne McLandsborough, John G. Gibbons

published 19 Jul 2024

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Association of birth weight, childhood obesity, and age at menarche with the risk of ovarian dysfunction: A mendelian randomization study

Chunxiao Dang, Jianjuan Li, Xiao Yu, Jinxing Liu, Pengfei Liu, Xiaoling Yang

published 18 Jul 2024

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Trans-ancestry analysis in over 799,000 individuals yields new insights into the genetic etiology of colorectal cancer

Changlong Yang, Zhenglin Chang, Youguo Dai, Jinzhao Mo, Qitai Zhang, Mingming Zhu, Likun Luan, Jinhu Zhang, Baoqing Sun, Junyi Jia

published 18 Jul 2024

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Puzzle Hi-C: An accurate scaffolding software

Guoliang Lin, Zhiru Huang, Tingsong Yue, Jing Chai, Yan Li, Huimin Yang, Wanting Qin, Guobing Yang, Robert W. Murphy, Ya-ping Zhang, Zijie Zhang, Wei Zhou, Jing Luo

published 15 Jul 2024

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