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Genome analysis

Genomic evolution of SARS-CoV-2 delta variants pre- and post-omicron emergence using alignment-free machine learning models

Sathish Sankar, Kaushika Anandharaman, Pradeesh Selvam, Aswini Jayaraman, Deepak Jayakumar, Pachamuthu Balakrishnan, Marie Larsson, Vijayakumar Velu, Sivadoss Raju, Esaki M. Shankar

published 19 Mar 2026

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Gene expression and metadata based identification of key genes for lung cancer, COPD, and IPF using machine learning and statistical models

Mst. Farjana Yasmin, Md. Faruk Hosen, Md. Abul Basar, Anichur Rahman, Mahedi Hasan, Fahmid Al Farid, Hezerul Abdul Karim, Abu Saleh Musa Miah

published 19 Mar 2026

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Non-invasive host transcriptome and HPV oncogene expression map the molecular landscape of HPV-driven cervical lesions

Mohamad Ammar Ayass, Naila Zaman, Natalya Griko, Victor Pashkov, Kevin Zhu, Ghulam Abbas, Melesse Ghelan, Ramya Ramankutty Nair, Tutku Okyay, Jin Zhang, Lina Abi-Mosleh

published 19 Mar 2026

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Bayesian variable selection for genome-wide association study of grain traits in rice

Rupam Basu, Sabyasachi Mukhopadhyay, Kaustubh Adhikari

published 17 Mar 2026

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Multi-omics analysis identifies CCNB1 as a cell cycle factor driving glioblastoma progression and its inhibition by resveratrol

Bohan Liu, Dazhao Peng, Yankun Chen, Qiuling Li, Yuedong Hu, Shiyu Liu, Huimin Hu

published 16 Mar 2026

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A new perspective on population genetics: Deciphering the relationship between genetic variants and disease prevalence in Psoriasis

Yuanjing Zhang, Weiran Li, Wanrong Wang, Kejia Wu, Feiran Zhou, Xiaodong Zheng

published 13 Mar 2026

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TSSpredator-Web: A web-application for transcription start site prediction and exploration

Mathias Witte Paz, Alexander Herbig, Kay Nieselt

published 13 Mar 2026

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Lessons learned from manual curation of thousands of gene models in the nematode Pristionchus pacificus

Christian Rödelsperger, Neha Agyal, Shiela Pearl Quiobe, Hao Wu, Waltraud Röseler, Dafne Ibarra-Morales, Ralf J. Sommer

published 12 Mar 2026

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Integrative transcriptomics unravels the central role of fatty acid elongation in early cotton fiber development

Xiaomei Ma, Gang Wang, Chengguang Dong, Feng Liu

published 12 Mar 2026

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Psoriasis risk allele function in activated Th1/17 cells with “memory” to antigen exposure

Bayazit Yunusbayev, Sergei Ryakhovsky, Radick Altinbaev, Anastasia Kislova, Kseniya Danilko, Liudmila Kraeva, Milyausha Yunusbaeva

published 11 Mar 2026

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Genomic and phylogenomic exploration of Vibrio cholerae strain SU129B isolated from Penaeus vannamei: Resistance, virulence, and evolutionary dynamics in bangladeshi aquaculture

Mohammad Sharif Uddin, Kazi Chamonara, Md. Habib Ullah Masum, Afifa Siddiqua, Imam Hossain, Sumaia Sultana, Sajedul Islam

published 10 Mar 2026

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Transcriptomic profiling of clear cell renal cell carcinoma reveals age-dependent molecular signatures and clinical stratification patterns

Yun Niu, Yunchao Su, Xiaoxi Wang, Xiaoyuan Yang, Dingrong Zhong

published 10 Mar 2026

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Habitual coffee consumption poorly correlates with sleep quality and daytime sleepiness: A cross-sectional study

Simon Söderholm, Martin Ulander, Vanessa William Toma, Sara Kaufmann, Xiangyu Qiao, Daniel Berglind, Susanna Calling, Bledar Daka, Ludger Grote, Mats Martinell, Frida Bergman, Pontus Henriksson, Carl-Johan Östgren, Wen Zhong, Claudio Cantù, Fredrik Iredahl

published 09 Mar 2026

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