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Genome analysis

GermVarX: A Robust Workflow for Joint Germline Variant Exploration in whole-exome sequencing cohorts

Thao Thi Phuong Nguyen, Dung Duc Nguyen, [ ... ], Trang Thi Ha Tran

Analysis of morphological, morphokinetics, cell-free DNA, microRNAs parameters to predict aneuploidy status of embryos

Achmad Kemal Harzif, Intan Indah Permatasari, [ ... ], Budi Wiweko

Hepatic transcriptomic responses in gravid and non-gravid rats exposed to HFPO-DA: Analyses to inform the role of maternal effects in neonatal toxicity

Melissa M. Heintz, Chad M. Thompson, [ ... ], Laurie C. Haws

Integrated transcriptome and single-cell sequencing analysis identify blood-pancreas shared lncRNA biomarkers in new-onset T2DM

Yan Wang, Yangming Qu, [ ... ], Yan Yao

Chloroplast genome assembly, annotation, comparative genomics, and genetic diversity analysis of a vulnerable endemic species Lavandula maroccana Murb

Manosh Kumar Biswas, Jean Legeay, [ ... ], Bulbul Ahmed

Transcriptional regulation in skeletal muscle and adipose tissue of lean and obese colony cats

Rahel Rigotti, Annette Liesegang, [ ... ], Brigitta Wichert

Composite selection signal analysis: Uncovering candidate genes and quantitative trait loci in Indian sheep breeds

Sapna Nath, Satish Kumar Illa, [ ... ], Vinod Kumar Yata

Transcriptional and functional characterization of terpene synthase genes of the aromatic plant Plectranthus hadiensis

Hinano Mizuno, Kenro Tokuhiro, [ ... ], Hiroki Sugimoto

Isolation methods influence the biological properties of Wharton’s Jelly-derived mesenchymal stem cells: A comparative study of yield, viability, proliferation, differentiation potential, and proteomic profiles

Jens Long Nguyen, Samih Mohamed-Ahmed, [ ... ], Mariann Haavik Lysfjord Bentsen

Quantitative profiling of lifespan-dependent cell-cell communication potential reveals dynamic ligand-receptor network shifts across mouse tissues

Boyong Wei, Evan P. Troendle, David A. Simpson, Alan W. Stitt

Hippocampal transcriptome profiling reveals status epilepticus-induced early changes in gene expression mainly implicating in neuroinflammation and immune responses linked to microglial dysfunction

Hui-Ling Tang, Yu Min, Yue-Sheng Long

The effect of cold ischemia time on hypoxia, EMT, and apoptosis pathways in normal colon mucosa

Katarzyna Duzowska, Mikołaj Opiełka, [ ... ], Natalia Filipowicz

Genomic evolution of SARS-CoV-2 delta variants pre- and post-omicron emergence using alignment-free machine learning models

Sathish Sankar, Kaushika Anandharaman, [ ... ], Esaki M. Shankar

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