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Genome analysis

Genomic insights into Yanbian cattle: Breed-specific selective sweeps identified by whole-genome sequencing

Jihye Baek, Chun-Long Yan, Qingshan Gao, Seungwoo Son, Hak-kyo Lee, Donghyun Shin, Chang-Guo Yan

published 15 Sep 2025

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Microsatellite development for Theridion evexum (Araneae: Theridiidae) using low-coverage genome sequencing and the MiMi script

Ruth Madrigal-Brenes, Gilbert Barrantes, Luis Sandoval, Eric J. Fuchs

published 15 Sep 2025

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Gene expression alterations in testicular biopsies from males with spermatogenesis arrest identified by transcriptome analysis

Osamah Batiha, Esra’a Al-Zoubi, Rowida Almomani, Mohammad A. Al Smadi, Sura Alrawabdeh, Omar Alshokaibi, Hussam Abu-Farsakh, Abedalrhman Alkhateeb, Masood Abu-Halima

published 12 Sep 2025

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Everything, everywhere, all at once - Surveillance and molecular epidemiology reveal Melissococcus plutonius is endemic among Michigan, US beekeeping operations

Peter D. Fowler, Upasana Dhakal, Jeff H. Chang, Meghan O. Milbrath

published 12 Sep 2025

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Transcriptome analysis of shade-induced growth and photosynthetic responses in soybean cultivars

Fengyi Zhang, Runnan Zhou, Rongqiang Yuan, Xiao Zhu, Xinyue Zhang, Sobhi F. Lamlom, Dai Shi, Ahmed M. Abdelghany, Jidao Du, Honglei Ren, Lijuan Qiu

published 10 Sep 2025

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An improved nuclei isolation protocol from leaf tissue for single-cell transcriptomics

Gabriela Madrid, Gabriel Angelo Saraiva Raimundo, Fabian Andres Reyes, Edgard Augusto de Toledo Picoli, Marcio F. R. Resende Jr., Kelly M. Balmant

published 10 Sep 2025

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Exploring the interplay between circadian rhythms and obesity: A Boolean network approach to understanding metabolic dysregulation

Meitner Cadena, George E. Barreto

published 09 Sep 2025

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STmiR: A Novel XGBoost-based framework for spatially resolved miRNA activity prediction in cancer transcriptomics

Jiaqi Yuan, Peng Xu, Zheng Ye, Wenbin Liu

published 09 Sep 2025

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Causal associations between psoriasis and atopic dermatitis: A bidirectional Mendelian randomization study

Zixia Wang, Hao Nie, Xinyu Fan, Muyao Wang, Weili Chen, Quncai Huang, Junchao Xiao, Wenhui Wang

published 08 Sep 2025

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Evolutionary dynamics in plastomes and mitogenomes of diatoms

Aimee Caye G. Chang, Mailor W. W. Amaral, Megan Greenwood, Catherine Ikudaisi, Jingchun Li, Sarah E. Hamsher, Scott Miller, Patrick Kociolek

published 05 Sep 2025

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ProteinWeaver: A webtool to visualize ontology-annotated protein networks

Oliver Anderson, Altaf Barelvi, Aden O’Brien, Ainsley Norman, Iris Jan, Anna Ritz

published 05 Sep 2025

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Gene expression profiling and pathway analysis in acute myeloid leukaemia-normal karyotype patients

Angeli Ambayya, Rozaimi Razali, Sarina Sulong, Yee Yee Yap, Veena Selvaratnam, Jameela Sathar, Rosline Hassan

published 05 Sep 2025

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Leveraging dynamic stability to infer regulation in protein-protein interaction networks: A study of infectious vulnerability in COPD

Joyce Reimer, Jeffrey Page, Pranta Saha, Shichen Shen, Xiaoyu Zhu, Shuo Qian, Manoj Mammen, Jun Qu, Sanjay Sethi, Gordon Broderick

published 05 Sep 2025

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