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Genome analysis

High throughput transcriptomics analysis of ovine mammary epithelial cells stimulated with Staphylococcus aureus in vitro

Saif Adil Abbood Al-Janabi, Ghulam Asghar Sajid, Sidra Zeb, Muhammad Jasim Uddin, Mehmet Ulas Cinar

published 30 Sep 2025

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Is the extreme within-population genome size variation real in Spodoptera frugiperda?

Karine Durand, Kiwoong Nam

published 30 Sep 2025

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Predicting chromatin conformation contact maps

Alan Min, Jacob Schreiber, Anshul Kundaje, William S. Noble

published 29 Sep 2025

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Multi-omics analysis of parthanatos related molecular subgroup and prognostic model development in stomach adenocarcinoma

Xiangxin Wu, Lianming Cai, Yanping Liu, Bowen Wang, Tianyi Xia, Zhenhua Liu

published 26 Sep 2025

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Clinical, laboratory and genetic factors associated with smoking in a Brazilian Sickle Cell Disease (SCD) cohort

Theomario Cruz, Beatriz Araujo Oliveira, Mina Cintho Ozahata, Isabel Gomes, André Belisário, Anna Bárbara Carneiro-Proietti, Paula Loureiro, Sheila de Oliveira Garcia Mateos, Cecília Salete Alencar, Rodrigo Oliveira, Frederico L. A. Fernandes, Shannon Kelly, Brian Custer, Ester C. Sabino, Carla Luana Dinardo, for the Recipient Epidemiology and Donor Evaluation Study III (REDSIII Study)

published 26 Sep 2025

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Transcriptome differentiation in Cryptomeria japonica trees with different origins growing in the north and south of Japan

Tokuko Ujino-Ihara, Kentaro Uchiyama, Seiichi Kanetani, Yoshihisa Suyama, Yoshihiko Tsumura

published 26 Sep 2025

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A graph neural network-based approach for predicting SARS-CoV-2–human protein interactions from multiview data

Sumanta Ray, Syed Alberuni, Alexander Schönhuth

published 25 Sep 2025

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Dual efficacy-toxicity of Chelidonii Herba in chronic obstructive pulmonary disease: Integrated network pharmacology, immune profiling and molecular docking

Guoliang Chen, Tianqing Wang

published 23 Sep 2025

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Distinct transcriptomic effects of intermittent and chronic caloric restriction in mammary fat pad of a breast cancer mouse model

Bilge Guvenc Tuna, Nazim Arda Keles, Munevver Burcu Cicekdal, Soner Dogan, Sulev Koks

published 23 Sep 2025

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Unraveling the genomic complexity of secretion systems in the most virulent Xanthomonas arboricola pathovars

Sara Cuesta-Morrondo, Jerson Garita-Cambronero, Jaime Cubero

published 19 Sep 2025

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The GravyTrain toolbox for molecular cell biology

Oren Shatz, Zvulun Elazar

published 17 Sep 2025

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Genomic insights into Yanbian cattle: Breed-specific selective sweeps identified by whole-genome sequencing

Jihye Baek, Chun-Long Yan, Qingshan Gao, Seungwoo Son, Hak-kyo Lee, Donghyun Shin, Chang-Guo Yan

published 15 Sep 2025

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Microsatellite development for Theridion evexum (Araneae: Theridiidae) using low-coverage genome sequencing and the MiMi script

Ruth Madrigal-Brenes, Gilbert Barrantes, Luis Sandoval, Eric J. Fuchs

published 15 Sep 2025

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