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Genome analysis

Sequencing and analysis of 131 SARS-CoV-2 isolates in previously sampled and unsampled regions of Jordan from 2020 to 2023

Rame Khasawneh, Andrew W. Bartlow, Shirin Almharat, Abdullah Almuhasen, Ali Alhuniti, Lena Hajaya, Al Anood Al Habashneh, Osama Alshudefat, Mohammad Dojan, Abdelghani Tbakhi, Zeena Shaheen, Eiad Atwa, Colin PS Kruse, Osama Alsmadi, Samuel I. Koehler

published 27 Oct 2025

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Integrative GWAS and RNA-Seq analysis for target identification and virtual drug screening in colorectal cancer

Qinghui Liu, Yiyang Lei, Zixuan Liu, Jiale Han

published 27 Oct 2025

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Evaluating the Cauchy combination test for count data

Huda Alsulami, Silvia Liverani

published 24 Oct 2025

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Germinal center trajectories and transcriptional signatures define CLL subtypes and their pathway regulators

Ahmed Mohamed, Luca Giudice, José Basílio, Sabina Barresi, Pradeep Kumar Kopparapu, Vanda Friman, Marco Tartaglia, Tarja Malm, Andreas Tilevik, Ola Grimsholm

published 22 Oct 2025

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Behavioural, immunological and transcriptomic consequences of post-weaning social isolation and chronic celecoxib administration in mouse

Aodán Laighneach, Derek W. Morris, Saahithh Redddi Patlola, Marcelo Improta, Lieve Desbonnet, Gary Donohoe, John P. Kelly, Declan P. McKernan

published 22 Oct 2025

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The genome of Gallaecimonas pentaromativorans strain 10A, isolated from a Pacific oyster, sheds light on an environmentally widespread genus with remarkable metabolic potential

Yasmine Gouin, Adam Wilcockson, Amy M. Chan, Curtis A. Suttle, Kevin Xu Zhong

published 21 Oct 2025

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Genome sequencing and analysis of isolates of Cytospora sorbicola and Cytospora plurivora associated with almond and peach canker

Tawanda E. Maguvu, Rosa J. Frias, Florent P. Trouillas

published 17 Oct 2025

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Investigating the common genetic basis between inflammatory bowel disease and metabolic syndrome through genomic structural equation modeling

Pan Shen, Hao Xiong, Qing-Hua Luo, Yi-Fan Ding, Wei Ge, Wu Liao, Lei-Chang Zhang

published 16 Oct 2025

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SARS-CoV-2 sequencing artifacts associated with targeted PCR enrichment and read mapping

Kirsten Maren Ellegaard, Vithiagaran Gunalan, Raphael Sieber, Sharmin Jamshid Baig, Nicolai Balle Larsen, Marc Bennedbæk, Jonas Bybjerg-Grauholm, Leandro Andrés Escobar-Herrera, Tobias Gress, Theis Hass Thorsen, Anders Krusager, Gitte Nygaard Aasbjerg, Nour Saad Al-Tamimi, Casper Westergaard, Christina Wiid Svarrer, Morten Rasmussen, Marc Stegger

published 16 Oct 2025

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Identification of genes that differentiate Mannheimia haemolytica genotypes 1 and 2 using a pangenome approach

Darien Deschner, Janet E. Hill

published 16 Oct 2025

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Revealing the molecular mechanisms underlying Xuebijing against sepsis and septic acute kidney injury via bioinformatics and experimental approaches

Xing Li, Kaiqi Ren, Michal R. Baran, Juan Tang, Le Wang, Gabriel Mbuta Tchivelekete, Yi Guo, Yang Bai, Weijian Yan, Xinhua Shu

published 03 Oct 2025

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High throughput transcriptomics analysis of ovine mammary epithelial cells stimulated with Staphylococcus aureus in vitro

Saif Adil Abbood Al-Janabi, Ghulam Asghar Sajid, Sidra Zeb, Muhammad Jasim Uddin, Mehmet Ulas Cinar

published 30 Sep 2025

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Is the extreme within-population genome size variation real in Spodoptera frugiperda?

Karine Durand, Kiwoong Nam

published 30 Sep 2025

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