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Genomics

HaTSPiL: A modular pipeline for high-throughput sequencing data analysis

Edoardo Morandi, Matteo Cereda, Danny Incarnato, Caterina Parlato, Giulia Basile, Francesca Anselmi, Andrea Lauria, Lisa Marie Simon, Isabelle Laurence Polignano, Francesca Arruga, Silvia Deaglio, Elisa Tirtei, Franca Fagioli, Salvatore Oliviero

published 15 Oct 2019

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Comparison of conventional BLUP and single-step genomic BLUP evaluations for yearling weight and carcass traits in Hanwoo beef cattle using single trait and multi-trait models

Hossein Mehrban, Deuk Hwan Lee, Masoumeh Naserkheil, Mohammad Hossein Moradi, Noelia Ibáñez-Escriche

published 14 Oct 2019

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Evaluation of the bacterial ocular surface microbiome in clinically normal cats before and after treatment with topical erythromycin

Joshua E. Darden, Erin M. Scott, Carolyn Arnold, Elizabeth M. Scallan, Bradley T. Simon, Jan S. Suchodolski

published 11 Oct 2019

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Amphibian skin-associated Pigmentiphaga: Genome sequence and occurrence across geography and hosts

Molly C. Bletz, Boyke Bunk, Cathrin Spröer, Peter Biwer, Silke Reiter, Falitiana C. E. Rabemananjara, Stefan Schulz, Jörg Overmann, Miguel Vences

published 11 Oct 2019

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Large-scale phylogenomic analysis suggests three ancient superclades of the WUSCHEL-RELATED HOMEOBOX transcription factor family in plants

Cheng-Chiang Wu, Fay-Wei Li, Elena M. Kramer

published 11 Oct 2019

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Transforming growth factor beta 1 induces methylation changes in lung fibroblasts

Miguel Negreros, James S. Hagood, Celia R. Espinoza, Yalbi I. Balderas-Martínez, Moisés Selman, Annie Pardo

published 11 Oct 2019

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Genetic diversity and population structure of the Mediterranean sesame core collection with use of genome-wide SNPs developed by double digest RAD-Seq

Merve Basak, Bulent Uzun, Engin Yol

published 10 Oct 2019

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Identification of muscle-specific candidate genes in Simmental beef cattle using imputed next generation sequencing

Farhad Bordbar, Just Jensen, Bo Zhu, Zezhao Wang, Lei Xu, Tianpeng Chang, Ling Xu, Min Du, Lupei Zhang, Huijiang Gao, Lingyang Xu, Junya Li

published 10 Oct 2019

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Genome-wide investigation of superoxide dismutase (SOD) gene family and their regulatory miRNAs reveal the involvement in abiotic stress and hormone response in tea plant (Camellia sinensis)

Chengzhe Zhou, Chen Zhu, Haifeng Fu, Xiaozhen Li, Lan Chen, Yuling Lin, Zhongxiong Lai, Yuqiong Guo

published 10 Oct 2019

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Comparison of transcriptomes of an orthotospovirus vector and non-vector thrips species

Anita Shrestha, Donald E. Champagne, Albert K. Culbreath, Mark R. Abney, Rajagopalbabu Srinivasan

published 10 Oct 2019

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Clustering of the structures by using “snakes-&-dragons” approach, or correlation matrix as a signal

Victor P. Andreev, Gang Liu, Jarcy Zee, Lisa Henn, Gilberto E. Flores, Robert M. Merion

published 10 Oct 2019

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Gene expression profiling of whole blood: A comparative assessment of RNA-stabilizing collection methods

Duncan E. Donohue, Aarti Gautam, Stacy-Ann Miller, Seshamalini Srinivasan, Duna Abu-Amara, Ross Campbell, Charles R. Marmar, Rasha Hammamieh, Marti Jett

published 10 Oct 2019

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Framework for rational donor selection in fecal microbiota transplant clinical trials

Claire Duvallet, Caroline Zellmer, Pratik Panchal, Shrish Budree, Majdi Osman, Eric J. Alm

published 10 Oct 2019

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