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Genomics

False-negative errors in next-generation sequencing contribute substantially to inconsistency of mutation databases

Young-Ho Kim, Yura Song, Jong-Kwang Kim, Tae-Min Kim, Hye Won Sim, Hyung-Lae Kim, Hyonchol Jang, Young-Woo Kim, Kyeong-Man Hong

published 12 Sep 2019

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uORF-Tools—Workflow for the determination of translation-regulatory upstream open reading frames

Anica Scholz, Florian Eggenhofer, Rick Gelhausen, Björn Grüning, Kathi Zarnack, Bernhard Brüne, Rolf Backofen, Tobias Schmid

published 12 Sep 2019

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Genomic characterization of the complete terpene synthase gene family from Cannabis sativa

Keith D. Allen, Kevin McKernan, Christopher Pauli, Jim Roe, Anthony Torres, Reggie Gaudino

published 12 Sep 2019

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Identification of bovine CpG SNPs as potential targets for epigenetic regulation via DNA methylation

Mariângela B. C. Maldonado, Nelson B. de Rezende Neto, Sheila T. Nagamatsu, Marcelo F. Carazzolle, Jesse L. Hoff, Lynsey K. Whitacre, Robert D. Schnabel, Susanta K. Behura, Stephanie D. McKay, Jeremy F. Taylor, Flavia L. Lopes

published 12 Sep 2019

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Quantitative detection of ALK fusion breakpoints in plasma cell-free DNA from patients with non-small cell lung cancer using PCR-based target sequencing with a tiling primer set and two-step mapping/alignment

Kei Kunimasa, Kikuya Kato, Fumio Imamura, Yoji Kukita

published 12 Sep 2019

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Genome-wide analysis of DNA methylation profile identifies differentially methylated loci associated with human intervertebral disc degeneration

Akihiro Ikuno, Koji Akeda, Shin-ichiro Takebayashi, Motomu Shimaoka, Katsuzumi Okumura, Akihiro Sudo

published 12 Sep 2019

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Analysis of Zobellella denitrificans ZD1 draft genome: Genes and gene clusters responsible for high polyhydroxybutyrate (PHB) production from glycerol under saline conditions and its CRISPR-Cas system

Yu-Wei Wu, Shih-Hung Yang, Myung Hwangbo, Kung-Hui Chu

published 12 Sep 2019

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Transcriptome divergence during leaf development in two contrasting switchgrass (Panicum virgatum L.) cultivars

Nathan A. Palmer, R. V. Chowda-Reddy, Anthony A. Muhle, Satyanarayana Tatineni, Gary Yuen, Serge J. Edmé, Robert B. Mitchell, Gautam Sarath

published 12 Sep 2019

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Sex-dependent and -independent transcriptional changes during haploid phase gametogenesis in the sugar kelp Saccharina latissima

Gareth A. Pearson, Neusa Martins, Pedro Madeira, Ester A. Serrão, Inka Bartsch

published 12 Sep 2019

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Structural equation modeling for hypertension and type 2 diabetes based on multiple SNPs and multiple phenotypes

Saebom Jeon, Ji-yeon Shin, Jaeyong Yee, Taesung Park, Mira Park

published 12 Sep 2019

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Control of human testis-specific gene expression

Jay C. Brown

published 12 Sep 2019

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ViraMiner: Deep learning on raw DNA sequences for identifying viral genomes in human samples

Ardi Tampuu, Zurab Bzhalava, Joakim Dillner, Raul Vicente

published 11 Sep 2019

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Loss of prostatic acid phosphatase and α-synuclein cause motor circuit degeneration without altering cerebellar patterning

Maryam Rahimi-Balaei, Matthew Buchok, Pirkko Vihko, Fiona E. Parkinson, Hassan Marzban

published 11 Sep 2019

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