Genomics

High throughput detection and genetic epidemiology of SARS-CoV-2 using COVIDSeq next-generation sequencing

Rahul C. Bhoyar, Abhinav Jain, Paras Sehgal, Mohit Kumar Divakar, Disha Sharma, Mohamed Imran, Bani Jolly, Gyan Ranjan, Mercy Rophina, Sumit Sharma, Sanjay Siwach, Kavita Pandhare, Swayamprabha Sahoo, Maheswata Sahoo, Ananya Nayak, Jatindra Nath Mohanty, Jayashankar Das, Sudhir Bhandari, Sandeep K. Mathur, Anshul Kumar, Rahul Sahlot, Pallavali Rojarani, Juturu Vijaya Lakshmi, Avileli Surekha, Pulala Chandra Sekhar, Shelly Mahajan, Shet Masih, Pawan Singh, Vipin Kumar, Blessy Jose, Vidur Mahajan, Vivek Gupta, Rakesh Gupta, Prabhakar Arumugam, Anjali Singh, Ananya Nandy, Ragavendran P. V., Rakesh Mohan Jha, Anupama Kumari, Sheetal Gandotra, Vivek Rao, Mohammed Faruq, Sanjeev Kumar, Betsy Reshma G., Narendra Varma G., Shuvra Shekhar Roy, Antara Sengupta, Sabyasachi Chattopadhyay, Khushboo Singhal, Shalini Pradhan, Diksha Jha, Salwa Naushin, Saruchi Wadhwa, Nishu Tyagi, Mukta Poojary, Vinod Scaria, Sridhar Sivasubbu

published 17 Feb 2021

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16S rRNA gene sequencing of rectal swab in patients affected by COVID-19

Antonio Mazzarelli, Maria Letizia Giancola, Anna Farina, Luisa Marchioni, Martina Rueca, Cesare Ernesto Maria Gruber, Barbara Bartolini, Tommaso Ascoli Bartoli, Gaetano Maffongelli, Maria Rosaria Capobianchi, Giuseppe Ippolito, Antonino Di Caro, Emanuele Nicastri, Valerio Pazienza, INMI COVID-19 study group

published 17 Feb 2021

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Genetic diversity of Ethiopian durum wheat landraces

Kefyalew Negisho, Surafel Shibru, Klaus Pillen, Frank Ordon, Gwendolin Wehner

published 17 Feb 2021

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Feasibility of integrating canine olfaction with chemical and microbial profiling of urine to detect lethal prostate cancer

Claire Guest, Rob Harris, Karen S. Sfanos, Eva Shrestha, Alan W. Partin, Bruce Trock, Leslie Mangold, Rebecca Bader, Adam Kozak, Scott Mclean, Jonathan Simons, Howard Soule, Thomas Johnson, Wen-Yee Lee, Qin Gao, Sophie Aziz, Patritsia Maria Stathatou, Stephen Thaler, Simmie Foster, Andreas Mershin

published 17 Feb 2021

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Gene expression profiling identifies FLT3 mutation-like cases in wild-type FLT3 acute myeloid leukemia

Adrián Mosquera Orgueira, Andrés Peleteiro Raíndo, Miguel Cid López, Beatriz Antelo Rodríguez, José Ángel Díaz Arias, Roi Ferreiro Ferro, Natalia Alonso Vence, Ángeles Bendaña López, Aitor Abuín Blanco, Laura Bao Pérez, Paula Melero Valentín, Marta Sonia González Pérez, Claudio Cerchione, Giovanni Martinelli, Pau Montesinos Fernández, Manuel Mateo Pérez Encinas, José Luis Bello López

published 16 Feb 2021

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23-valent polysaccharide vaccine (PPSV23)-targeted serotype-specific identification of Streptococcus pneumoniae using the loop-mediated isothermal amplification (LAMP) method

Jiwon Lee, Youngbae Yoon, Eun Jin Kim, Donghyun Lee, Yeongjun Baek, Chika Takano, Bin Chang, Takahiro Iijima, Paul E. Kilgore, Satoshi Hayakawa, Tomonori Hoshino, Dong Wook Kim, Mitsuko Seki

published 16 Feb 2021

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Genome-wide association study on metabolite accumulation in a wild barley NAM population reveals natural variation in sugar metabolism

Mathias Ruben Gemmer, Chris Richter, Thomas Schmutzer, Manish L. Raorane, Björn Junker, Klaus Pillen, Andreas Maurer

published 16 Feb 2021

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Evolutionary history of Carnivora (Mammalia, Laurasiatheria) inferred from mitochondrial genomes

Alexandre Hassanin, Géraldine Veron, Anne Ropiquet, Bettine Jansen van Vuuren, Alexis Lécu, Steven M. Goodman, Jibran Haider, Trung Thanh Nguyen

published 16 Feb 2021

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Lactic acid-containing products for bacterial vaginosis and their impact on the vaginal microbiota: A systematic review

Erica L. Plummer, Catriona S. Bradshaw, Michelle Doyle, Christopher K. Fairley, Gerald L. Murray, Deborah Bateson, Lindi Masson, Josephine Slifirski, Gilda Tachedjian, Lenka A. Vodstrcil

published 11 Feb 2021

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Frameshift variant in MITF gene in a large family with Waardenburg syndrome type II and a co-segregation of a C2orf74 variant

Maan Abdullah Albarry, Muhammad Latif, Ahdab Qasem Alreheli, Mohammed A. Awadh, Ahmad M. Almatrafi, Alia M. Albalawi, Sulman Basit

published 11 Feb 2021

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Antimicrobial resistance and interspecies gene transfer in Campylobacter coli and Campylobacter jejuni isolated from food animals, poultry processing, and retail meat in North Carolina, 2018–2019

Dawn M. Hull, Erin Harrell, Arnoud H. M. van Vliet, Maria Correa, Siddhartha Thakur

published 11 Feb 2021

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Cell-free DNA in spent culture medium effectively reflects the chromosomal status of embryos following culturing beyond implantation compared to trophectoderm biopsy

Akihiro Shitara, Kazumasa Takahashi, Mayumi Goto, Harunori Takahashi, Takuya Iwasawa, Yohei Onodera, Kenichi Makino, Hiroshi Miura, Hiromitsu Shirasawa, Wataru Sato, Yukiyo Kumazawa, Yukihiro Terada

published 11 Feb 2021

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Growth performance, physiological parameters, and transcript levels of lipid metabolism-related genes in hybrid yellow catfish (Tachysurus fulvidraco ♀ × Pseudobagrus vachellii ♂) fed diets containing Siberian ginseng

Ming Xiao Li, Jun Qiang, Jing Wen Bao, Yi Fan Tao, Hao Jun Zhu, Pao Xu

published 11 Feb 2021

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Genomics

High throughput detection and genetic epidemiology of SARS-CoV-2 using COVIDSeq next-generation sequencing

16S rRNA gene sequencing of rectal swab in patients affected by COVID-19

Genetic diversity of Ethiopian durum wheat landraces

Feasibility of integrating canine olfaction with chemical and microbial profiling of urine to detect lethal prostate cancer

Gene expression profiling identifies FLT3 mutation-like cases in wild-type FLT3 acute myeloid leukemia

23-valent polysaccharide vaccine (PPSV23)-targeted serotype-specific identification of Streptococcus pneumoniae using the loop-mediated isothermal amplification (LAMP) method

Genome-wide association study on metabolite accumulation in a wild barley NAM population reveals natural variation in sugar metabolism

Evolutionary history of Carnivora (Mammalia, Laurasiatheria) inferred from mitochondrial genomes

Lactic acid-containing products for bacterial vaginosis and their impact on the vaginal microbiota: A systematic review

Frameshift variant in MITF gene in a large family with Waardenburg syndrome type II and a co-segregation of a C2orf74 variant

Antimicrobial resistance and interspecies gene transfer in Campylobacter coli and Campylobacter jejuni isolated from food animals, poultry processing, and retail meat in North Carolina, 2018–2019

Cell-free DNA in spent culture medium effectively reflects the chromosomal status of embryos following culturing beyond implantation compared to trophectoderm biopsy

Growth performance, physiological parameters, and transcript levels of lipid metabolism-related genes in hybrid yellow catfish (Tachysurus fulvidraco ♀ × Pseudobagrus vachellii ♂) fed diets containing Siberian ginseng

Genomics

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