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Genomics

Listeria monocytogenes Differential Transcriptome Analysis Reveals Temperature-Dependent Agr Regulation and Suggests Overlaps with Other Regulons

Dominique Garmyn, Yoann Augagneur, [ ... ], Pascal Piveteau

Estimating Additive and Non-Additive Genetic Variances and Predicting Genetic Merits Using Genome-Wide Dense Single Nucleotide Polymorphism Markers

Guosheng Su, Ole F. Christensen, [ ... ], Mogens S. Lund

Multi-Edge Gene Set Networks Reveal Novel Insights into Global Relationships between Biological Themes

Jignesh R. Parikh, Yu Xia, Jarrod A. Marto

Extensive Phenotypic Variation among Allelic T-DNA Inserts in Arabidopsis thaliana

Megan E. Valentine, Michael J. Wolyniak, Matthew T. Rutter

Association Test Based on SNP Set: Logistic Kernel Machine Based Test vs. Principal Component Analysis

Yang Zhao, Feng Chen, [ ... ], David C. Christiani

Computational Prediction of Polycomb-Associated Long Non-Coding RNAs

Galina V. Glazko, Boris L. Zybailov, Igor B. Rogozin

A Predictive Framework for Integrating Disparate Genomic Data Types Using Sample-Specific Gene Set Enrichment Analysis and Multi-Task Learning

Brian D. Bennett, Qing Xiong, Sayan Mukherjee, Terrence S. Furey

The Genomic Signature of Human Rhinoviruses A, B and C

Spyridon Megremis, Philippos Demetriou, [ ... ], Nikolaos G. Papadopoulos

MyDas, an Extensible Java DAS Server

Gustavo A. Salazar, Leyla J. García, [ ... ], Henning Hermjakob

An Integrated Pipeline for de Novo Assembly of Microbial Genomes

Andrew Tritt, Jonathan A. Eisen, Marc T. Facciotti, Aaron E. Darling

Deep Sequencing of the Transcriptomes of Soybean Aphid and Associated Endosymbionts

Sijun Liu, Nanasaheb P. Chougule, Diveena Vijayendran, Bryony C. Bonning

Insect Innate Immunity Database (IIID): An Annotation Tool for Identifying Immune Genes in Insect Genomes

Robert M. Brucker, Lisa J. Funkhouser, [ ... ], Seth R. Bordenstein

Brain Transcriptional and Epigenetic Associations with Autism

Matthew R. Ginsberg, Robert A. Rubin, [ ... ], Marvin R. Natowicz

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