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Computational biology

Annotation of Two Large Contiguous Regions from the Haemonchus contortus Genome Using RNA-seq and Comparative Analysis with Caenorhabditis elegans

Roz Laing, Martin Hunt, [ ... ], John S. Gilleard

Comparative Genomics of Multidrug Resistance-Encoding IncA/C Plasmids from Commensal and Pathogenic Escherichia coli from Multiple Animal Sources

Claudia Fernández-Alarcón, Randall S. Singer, Timothy J. Johnson

Inferring a Transcriptional Regulatory Network from Gene Expression Data Using Nonlinear Manifold Embedding

Hossein Zare, Mostafa Kaveh, Arkady Khodursky

Transcriptome Sequencing of the Blind Subterranean Mole Rat, Spalax galili: Utility and Potential for the Discovery of Novel Evolutionary Patterns

Assaf Malik, Abraham Korol, [ ... ], Mark Band

Flanking Bases Influence the Nature of DNA Distortion by Platinum 1,2-Intrastrand (GG) Cross-Links

Debadeep Bhattacharyya, Srinivas Ramachandran, [ ... ], Stephen G. Chaney

Large Scale Replication Study of the Association between HLA Class II/BTNL2 Variants and Osteoarthritis of the Knee in European-Descent Populations

Ana M. Valdes, Unnur Styrkarsdottir, [ ... ], Nigel K. Arden

A Novel Approach for Mining Polymorphic Microsatellite Markers In Silico

Joseph I. Hoffman, Hazel J. Nichols

Predicting Final Extent of Ischemic Infarction Using Artificial Neural Network Analysis of Multi-Parametric MRI in Patients with Stroke

Hassan Bagher-Ebadian, Kourosh Jafari-Khouzani, [ ... ], James R. Ewing

A Bayesian Method for Evaluating and Discovering Disease Loci Associations

Xia Jiang, M. Michael Barmada, Gregory F. Cooper, Michael J. Becich

Impaired Vascular Contractility and Aortic Wall Degeneration in Fibulin-4 Deficient Mice: Effect of Angiotensin II Type 1 (AT₁) Receptor Blockade

Els Moltzer, Luuk te Riet, [ ... ], Jeroen Essers

A Robust Statistical Method for Association-Based eQTL Analysis

Ning Jiang, Minghui Wang, [ ... ], Zewei Luo

Transcriptome Fingerprinting Analysis: An Approach to Explore Gene Expression Patterns in Marine Microbial Communities

Montserrat Coll-Lladó, Silvia G. Acinas, Cristina Pujades, Carlos Pedrós-Alió

Kinetic Theory Approach to Modeling of Cellular Repair Mechanisms under Genome Stress

Jinpeng Qi, Yongsheng Ding, Ying Zhu, Yizhi Wu

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