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Computational biology

Genomic diversity, host associations, and tissue tropism of Hydrangea ringspot virus: A global and regional perspective

Juliana Osorio-Marulanda, Juliana Lopez-Jimenez, Juan F. Alzate

Integrative transcriptomics identifies an 18-gene candidate blood-accessible biomarker panel for longitudinal monitoring of spaceflight-induced muscle atrophy

Jae Ho Shim, Ji Yeon Lee, Jihye Han, Hyeon Soo Kim

Computational investigation and machine learning prediction of nanoparticle effects on hemodynamics in patient-specific aortic aneurysms

Mohammad Abdul Karim Khan, Kazi Ekramul Hoque, [ ... ], Mohammed Abdul Hannan

Shenling Qige Granules inhibit esophageal squamous cell carcinoma progression in TE-1 xenograft and cell-based models by modulating the DCN–TGF-β/Smad signaling axis

Zihui Liu, Yiting Gu, [ ... ], Zhihua Du

Integrated multi-omic analysis characterizes an IFNγ-responsive-to-myeloid-suppressive immune continuum in immune-active hepatocellular carcinoma

Luping Lin, Ningna Weng, [ ... ], Xiao Chen

GP-DHT: A dual-head transformer with supervised contrastive learning for shared-gene pretraining and single-cell GRN prediction

Shuai Yan, Qingzhi Yu, Wenfeng Dai, Xiang Cheng

Multi-locus genome-wide association analysis of grain yield, plant height, panicle length, and flowering time in the Senegalese pearl millet [Pennisetum glaucum (L.) R. Br.] germplasm

Aliou Ba, Oumar Diack, [ ... ], Phinehas Tukamuhabwa

Network toxicology, molecular docking and molecular dynamics simulations for bisphenol A neurotoxicity in depression pathogenesis

Jinlian Zhang, Yuanhao Ma, [ ... ], Ruikang Pang

Rigorous validation of graph-based network analysis reappraises biologically coherent ADHD-associated transcriptomic modules in peripheral blood

Nehal M. Ali

Codon-aware multi-scale feature fusion for metagenomic sequence classification

Yan Qian, Quanjie Song, Xinyi Xie, Li Deng

Characterization of the dual functions of Leishmania CK1.2 in both the parasite and the macrophage

Daniel Martel, Olivier Leclercq, [ ... ], Najma Rachidi

Sub-consensus haploid variant calling in long-read sequencing technology

Xavier Zair, Andreas Wilm, [ ... ], Swapnil Mishra

Identification of new fucosyltransferase-8 inhibitors: An integrated biochemical, biophysical, and computational approach

Muhammad Awais, Noor Rahman, [ ... ], Humaira Zafar

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