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Computational biology

NetMHCpan, a Method for Quantitative Predictions of Peptide Binding to Any HLA-A and -B Locus Protein of Known Sequence

Morten Nielsen, Claus Lundegaard, [ ... ], Søren Buus

Sequential Logic Model Deciphers Dynamic Transcriptional Control of Gene Expressions

Zhen Xuan Yeo, Sum Thai Wong, [ ... ], Masa Tsuchiya

The Princeton Protein Orthology Database (P-POD): A Comparative Genomics Analysis Tool for Biologists

Sven Heinicke, Michael S. Livstone, [ ... ], Kara Dolinski

Selection against Spurious Promoter Motifs Correlates with Translational Efficiency across Bacteria

Jeffrey L. Froula, M. Pilar Francino

Genome Dynamics of Short Oligonucleotides: The Example of Bacterial DNA Uptake Enhancing Sequences

Mohammed Bakkali

MHC Adaptive Divergence between Closely Related and Sympatric African Cichlids

Jonatan Blais, Ciro Rico, [ ... ], Louis Bernatchez

Global Profiling of DNA Replication Timing and Efficiency Reveals that Efficient Replication/Firing Occurs Late during S-Phase in S. pombe

Majid Eshaghi, R. Krishna M. Karuturi, [ ... ], Jianhua Liu

Extensive Gains and Losses of Olfactory Receptor Genes in Mammalian Evolution

Yoshihito Niimura, Masatoshi Nei

Cis-Cotranscription of Two Beta Globin Genes during Chicken Primitive Hematopoiesis

Hiroki Nagai, Guojun Sheng

Systematic Association Mapping Identifies NELL1 as a Novel IBD Disease Gene

Andre Franke, Jochen Hampe, [ ... ], Stefan Schreiber

Genome Sequence of Fusobacterium nucleatum Subspecies Polymorphum — a Genetically Tractable Fusobacterium

Sandor E. Karpathy, Xiang Qin, [ ... ], Sarah K. Highlander

Large-Scale In Silico Mapping of Complex Quantitative Traits in Inbred Mice

Pengyuan Liu, Haris Vikis, [ ... ], Ming You

Neural Decision Boundaries for Maximal Information Transmission

Tatyana Sharpee, William Bialek

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