Peer Review History

Original SubmissionMarch 9, 2025
Decision Letter - Christian Schnell, PhD, Editor

Dear Ziad,

Thank you for submitting your manuscript entitled "Signaling of trans-saccadic prediction error by foveal neurons of the monkey superior colliculus" for consideration as a Research Article by PLOS Biology.

Your manuscript has now been evaluated by the PLOS Biology editorial staff as well as by an academic editor with relevant expertise and I am writing to let you know that we would like to send your submission out for external peer review.

However, before we can send your manuscript to reviewers, we need you to complete your submission by providing the metadata that is required for full assessment. To this end, please login to Editorial Manager where you will find the paper in the 'Submissions Needing Revisions' folder on your homepage. Please click 'Revise Submission' from the Action Links and complete all additional questions in the submission questionnaire.

Once your full submission is complete, your paper will undergo a series of checks in preparation for peer review. After your manuscript has passed the checks it will be sent out for review. To provide the metadata for your submission, please Login to Editorial Manager (https://www.editorialmanager.com/pbiology) within two working days, i.e. by Mar 14 2025 11:59PM.

If your manuscript has been previously peer-reviewed at another journal, PLOS Biology is willing to work with those reviews in order to avoid re-starting the process. Submission of the previous reviews is entirely optional and our ability to use them effectively will depend on the willingness of the previous journal to confirm the content of the reports and share the reviewer identities. Please note that we reserve the right to invite additional reviewers if we consider that additional/independent reviewers are needed, although we aim to avoid this as far as possible. In our experience, working with previous reviews does save time.

If you would like us to consider previous reviewer reports, please edit your cover letter to let us know and include the name of the journal where the work was previously considered and the manuscript ID it was given. In addition, please upload a response to the reviews as a 'Prior Peer Review' file type, which should include the reports in full and a point-by-point reply detailing how you have or plan to address the reviewers' concerns.

During the process of completing your manuscript submission, you will be invited to opt-in to posting your pre-review manuscript as a bioRxiv preprint. Visit http://journals.plos.org/plosbiology/s/preprints for full details. If you consent to posting your current manuscript as a preprint, please upload a single Preprint PDF.

Feel free to email us at plosbiology@plos.org if you have any queries relating to your submission.

Kind regards,

Christian

Christian Schnell, PhD

Senior Editor

PLOS Biology

cschnell@plos.org

Revision 1
Decision Letter - Christian Schnell, PhD, Editor

Dear Ziad,

Thank you for your patience while your manuscript "Signaling of trans-saccadic prediction error by foveal neurons of the monkey superior colliculus" went through peer-review at PLOS Biology. Your manuscript has now been evaluated by the PLOS Biology editors, an Academic Editor with relevant expertise, and by several independent reviewers.

In light of the reviews, which you will find at the end of this email, we are pleased to offer you the opportunity to address the comments from the reviewers in a revision that we anticipate should not take you very long. We will then assess your revised manuscript and your response to the reviewers' comments with our Academic Editor aiming to avoid further rounds of peer-review, although we might need to consult with the reviewers, depending on the nature of the revisions.

In addition to these revisions, you will need to complete some formatting changes, which you will receive in a follow up email. A member of our team will be in touch with a set of requests shortly.

We expect to receive your revised manuscript within 1 month. Please email us (plosbiology@plos.org) if you have any questions or concerns, or would like to request an extension.

At this stage, your manuscript remains formally under active consideration at our journal; please notify us by email if you do not intend to submit a revision so that we withdraw the manuscript.

**IMPORTANT - SUBMITTING YOUR REVISION**

Your revisions should address the specific points made by each reviewer. Please submit the following files along with your revised manuscript:

1. A 'Response to Reviewers' file - this should detail your responses to the editorial requests, present a point-by-point response to all of the reviewers' comments, and indicate the changes made to the manuscript.

*NOTE: In your point-by-point response to the reviewers, please provide the full context of each review. Do not selectively quote paragraphs or sentences to reply to. The entire set of reviewer comments should be present in full and each specific point should be responded to individually.

You should also cite any additional relevant literature that has been published since the original submission and mention any additional citations in your response.

2. In addition to a clean copy of the manuscript, please also upload a 'track-changes' version of your manuscript that specifies the edits made. This should be uploaded as a "Revised Article with Changes Highlighted " file type.

*Resubmission Checklist*

When you are ready to resubmit your revised manuscript, please refer to this resubmission checklist: https://plos.io/Biology_Checklist

To submit a revised version of your manuscript, please go to https://www.editorialmanager.com/pbiology/ and log in as an Author. Click the link labelled 'Submissions Needing Revision' where you will find your submission record.

Please make sure to read the following important policies and guidelines while preparing your revision:

*Published Peer Review*

Please note while forming your response, if your article is accepted, you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. Please see here for more details:

https://blogs.plos.org/plos/2019/05/plos-journals-now-open-for-published-peer-review/

*PLOS Data Policy*

Please note that as a condition of publication PLOS' data policy (http://journals.plos.org/plosbiology/s/data-availability) requires that you make available all data used to draw the conclusions arrived at in your manuscript. If you have not already done so, you must include any data used in your manuscript either in appropriate repositories, within the body of the manuscript, or as supporting information (N.B. this includes any numerical values that were used to generate graphs, histograms etc.). For an example see here: http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.1001908#s5

*Blot and Gel Data Policy*

We require the original, uncropped and minimally adjusted images supporting all blot and gel results reported in an article's figures or Supporting Information files. We will require these files before a manuscript can be accepted so please prepare them now, if you have not already uploaded them. Please carefully read our guidelines for how to prepare and upload this data: https://journals.plos.org/plosbiology/s/figures#loc-blot-and-gel-reporting-requirements

*Protocols deposition*

To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols

Thank you again for your submission to our journal. We hope that our editorial process has been constructive thus far, and we welcome your feedback at any time. Please don't hesitate to contact us if you have any questions or comments.

Sincerely,

Christian

Christian Schnell, PhD

Senior Editor

PLOS Biology

cschnell@plos.org

----------------------------------------------------------------

REVIEWS:

Reviewer #1: The study of Zhang et al. uncovers an interesting line of evidence supporting the role of primate superior colliculus in detecting a change in the visual field during a saccadic eye movement. By using a simple paradigm in which a static visual image undergoes a change contingent upon a saccade start, they show that the neurons in primate SC can encode that change regardless of these visual neurons' own tuning preference for stimulus features. They also demonstrate that the magnitude of this change detection in SC neurons scales with the amount of change in the visual stimulus in shape and spatial frequency. Overall, they report a general trend in the peri-saccadic activity of SC neurons consistent with a mechanism of detecting prediction error.

The paper overall is excellent. The questions are well-defined, the results are clear, and the statistical methods are sound. The paper is also clearly written. This study addresses an important problem in peri-saccadic visual perception - how does the visual system maintain stability and detect change across saccades? This question has somewhat gone out of fashion in recent neuroscience work because of some controversial findings in the literature. Zhang et al's study offers evidence for a refreshing alternative to approaching the problem. Therefore, this study is a significant contribution to the field.

I don't have any major issues with the claims and results. If the authors could address the following minor comments, I believe that would improve the paper.

1. A. The introduction gives the example of the Mona Lisa to motivate the visual stability problem. However, I found the example a bit confusing. My confusion was that when I look at Mona Lisa's eyes and saccade to her mouth, I don't perceive a stable portrait. I perceive that her smile suddenly vanishes. This 'fleeting smile' is what made this artwork so popular. Margaret Livingstone has published a paper explaining this phenomenon (https://doi.org/10.1126/science.290.5495.1299b). The visual system detects a change in the portrait, which is not actually there in real-time. It is simply a function of how visual receptive fields are arranged topographically - low spatial frequency-tuned neurons tile more of peripheral vision than foveal. Maybe the authors can use a different example that doesn't cause this particular confusion.

B. Conceptually, the framing of the authors' main question needs to explicate certain nuances. In line 638, they say - "our focus here: how is visual sensation of a stably present visual object in the environment handled when an eye movement brings this object inside a given neuron's RF?". Due to the gradient of spatial frequency over a visual retinotopic map, a peripheral object, otherwise stable, will necessarily look different to visual neurons at the fovea. How does the visual system deal with the mismatch of spatial frequency of its filters? I understand that the authors are not addressing this question in their study, but this nuance could be explicitly mentioned to make the discussion richer and avoid confusion.

2. Along the same lines, maybe the authors can discuss if the visual system uses a similar mechanism to detect a peri-saccadic perceptual change not because of a physical change in the visual field but because of the spatial frequency gradient on the visual images - exactly like the 'fleeting smile' on Mona Lisa. Given the recent findings of short latency responses to faces in primate SC (https://doi.org/10.1016/j.neuron.2024.06.005), I think it is a great opportunity for the authors to link their findings of prediction error in SC to short latency face detection in primate SC. This could be one way to use the same example but more powerfully and less confusingly. But I leave it up to the authors to decide.

3. The methodology would be more robust if the authors could provide, if possible, a photodiode readout of the frame luminance across time. This is to be absolutely sure that the saccade-triggered change in visual stimulus occurred mid-flight. If the current calculations (I assume based on software and hardware TTLs) could be corroborated with actual events on the screen, all doubts about instrumentation delays would be cleared.

Reviewer #2: Summary

The authors identify a potential mismatch signal between expected and experienced spatial frequencies across saccades in foveal neurons of the macaque superior colliculus. In particular, reafferent visual firing rates of foveal SC neurons are slightly higher when the stimulus that is foveated has its spatial frequency changed unexpectedly during a saccade. They find that this phenomenon is unique to the condition where the animal initiates a saccade, and scales with the number of features that are mismatched pre- and post-saccadically (i.e., firing rates for shape + spatial frequency changes are higher than for spatial frequency alone).

Comments

Since one main goal of making saccades is to foveate targets of interest, this work showing that unexpected events across saccades are processed at the center of gaze is a valuable addition to the literature on the neural basis of visual stability across saccades.

1) My biggest concern is that the main mismatch effects shown across the population of neurons in Figs. 3, 6, and 7 are small, and I'd want to be sure that they are robust across potential analysis choices. For example, for all the population visual response comparisons, the authors calculate reafferent firing rates aligned to the change event in all conditions including those with a saccade. However, this period includes the offset of the saccade when the eyes are still in flight and a rebound in the neuronal activity after a period of saccadic suppression, both of which may introduce spurious transients in the visual responses. Are the same effects observed even when the reafferent period is aligned to the offset of the saccade rather than the visual change?

2) The main analyses show the mean firing rates and their modulation across conditions for individual neurons and a statistical comparison of those means across the population. It would also be informative to see what proportion of individual neurons show a significant difference between the change and control conditions across trials.

3) Were there any systematic differences in eye position or velocity, either as post-saccadic fixational eye movements/drift or during the instructed saccade, when the visual feature changed intrasaccadically?

4) Finally, in the Discussion section, the authors speculate on ways in which foveal neurons may have access to the pre-saccadic visual information in order to identify the difference between pre- and post-saccadic stimuli. These include neurons with larger receptive fields and visual information carried by motor neurons. The most straightforward possibility in my opinion is that of pre-saccadic remapping, which the authors mention but reject as a possible explanation. I did not follow the reasoning for why this is a conceptually unrelated phenomenon. If a visually responsive cell could, via remapping, briefly sample the part of the visual field that it will occupy after a saccade, would that not give it direct access to both the pre- and post-saccadic visual stimulus? However, this is only a relatively minor point of interpretation that does not change the presentation of the main observations here.

Reviewer #3: How our visual system keeps a stable representation of the visual scene during saccadic eye movements is a crucial piece of the puzzle of how in a dynamically changing world our brain constructs a stable mental model resilient to changes in the flow of visual signals and other interruptions. In this study Zhang, Bogadhi and Hafed study how fovea representing neurons within the superior colliculus (SC) are modulated by information presented peripherally, when that information is going to be brought up to the fovea during an upcoming eye movement. It should be noted that, in spite of the significance of the fovea, in general in visual system electrophysiology experiments, the foveal representation is historically understudied and this also enhances the significance of the current paper. The manuscript is very well-written and the research questions are significant and properly studied. I did not find any major issues with the experimental design, analysis or interpretation. Thus, there are only a few minor comments as listed below. However, I have a few comments, more reflecting of missed opportunities rather than necessary analysis, and I totally leave it to the authors to decide if they want to address them in this paper or leave it to be addressed in future manuscripts.

Comment1: As pointed out by the authors, the transfer of information across various representations has been reported in several contexts. In spite the rich literature, there are not many studies investigating the neural mechanisms involved in such "rerouting of information". It would be great to know the authors' perspective on the neural machinery involved in such rerouting of information in the discussion section. Also, if their dataset allows, investigating how propagation of oscillatory activity might be coupled with information rerouting (e.g. similar to Neupane, Guitton, Pack PNAS 2017) could be a very good extension of the current study. Again, leaving it for the authors to decide when and how to dig deeper into the neural mechanisms involved.

Comment 2) Coding multiple locations can also be interpreted as having "mixed selectivity". Population-level analyses such as PCA have been shown to reveal hidden aspects of the neural code where single neuron analysis is missing to trace them. Even non-simultaneously recorded neurons can be used to trace how much information at the population level does exist regarding a peripheral target and how this information changes around the time of saccade. Again, I would leave it to the authors to decide whether they want to employ population-level analysis for this manuscript or not.

Comment 3) I was hopeful to see a figure depicting the tiling of the receptive fields around the fovea, or at least their centers.

Comment 4) It seems imperative to show the normalized response of population of neurons (equivalent of figure 2b, c but for the population) before jumping to scatter plot-level description in figure 3. In general, the temporal dynamics at the population level is missing for almost all reported phenomena and it would increase the value of the paper to bridge the single neuron temporal response and population-level histograms/scatter plots with a population-level normalized response; and even preferably dynamics of an index such as ROC or modulation index across time.

Minor comments:

- Isn't it better to call it e.g. psuedosaccade in fig. 5? Calling it saccade might be confusing.

- Putting p values in the figures right above where the sample sizes are reported (e.g. n=59) could help the reader grasp the significance of the figures quicker.

Revision 2

Attachments
Attachment
Submitted filename: Zhang_RESPONSES.docx
Decision Letter - Christian Schnell, PhD, Editor

Dear Ziad,

Thank you for your patience while we considered your revised manuscript "Signaling of trans-saccadic prediction error by foveal neurons of the monkey superior colliculus" for publication as a Research Article at PLOS Biology. This revised version of your manuscript has been evaluated by the PLOS Biology editors and the Academic Editor.

Based on our Academic Editor's assessment of your revision, we are likely to accept this manuscript for publication, provided you satisfactorily address the following data and other policy-related requests:

* We would like to suggest a different title to improve its accessibility for our broad audience:

Foveal neurons of the monkey superior colliculus signal trans-saccadic prediction errors

* Please add the links to the funding agencies in the Financial Disclosure statement in the manuscript details.

* DATA POLICY:

You may be aware of the PLOS Data Policy, which requires that all data be made available without restriction: http://journals.plos.org/plosbiology/s/data-availability. For more information, please also see this editorial: http://dx.doi.org/10.1371/journal.pbio.1001797

Note that we do not require all raw data. Rather, we ask that all individual quantitative observations that underlie the data summarized in the figures and results of your paper be made available in one of the following forms:

1) Supplementary files (e.g., excel). Please ensure that all data files are uploaded as 'Supporting Information' and are invariably referred to (in the manuscript, figure legends, and the Description field when uploading your files) using the following format verbatim: S1 Data, S2 Data, etc. Multiple panels of a single or even several figures can be included as multiple sheets in one excel file that is saved using exactly the following convention: S1_Data.xlsx (using an underscore).

2) Deposition in a publicly available repository. Please also provide the accession code or a reviewer link so that we may view your data before publication.

Regardless of the method selected, please ensure that you provide the individual numerical values that underlie the summary data displayed in the following figure panels as they are essential for readers to assess your analysis and to reproduce it: S7DH

NOTE: the numerical data provided should include all replicates AND the way in which the plotted mean and errors were derived (it should not present only the mean/average values).

Please also ensure that figure legends in your manuscript include information on where the underlying data can be found, and ensure your supplemental data file/s has a legend.

Please ensure that your Data Statement in the submission system accurately describes where your data can be found.

* CODE POLICY

Per journal policy, if you have generated any custom code during the course of this investigation, please make it available without restrictions. Please ensure that the code is sufficiently well documented and reusable, and that your Data Statement in the Editorial Manager submission system accurately describes where your code can be found.

Please note that we cannot accept sole deposition of code in GitHub, as this could be changed after publication. However, you can archive this version of your publicly available GitHub code to Zenodo. Once you do this, it will generate a DOI number, which you will need to provide in the Data Accessibility Statement (you are welcome to also provide the GitHub access information). See the process for doing this here: https://docs.github.com/en/repositories/archiving-a-github-repository/referencing-and-citing-content

As you address these items, please take this last chance to review your reference list to ensure that it is complete and correct. If you have cited papers that have been retracted, please include the rationale for doing so in the manuscript text, or remove these references and replace them with relevant current references. Any changes to the reference list should be mentioned in the cover letter that accompanies your revised manuscript.

In addition to these revisions, you will need to complete some formatting changes, which you will receive in a follow up email. A member of our team will be in touch with a set of requests shortly.

We expect to receive your revised manuscript within two weeks.

To submit your revision, please go to https://www.editorialmanager.com/pbiology/ and log in as an Author. Click the link labelled 'Submissions Needing Revision' to find your submission record. Your revised submission must include the following:

- a cover letter that should detail your responses to any editorial requests, if applicable, and whether changes have been made to the reference list

- a Response to Reviewers file that provides a detailed response to the reviewers' comments (if applicable, if not applicable please do not delete your existing 'Response to Reviewers' file.)

- a track-changes file indicating any changes that you have made to the manuscript.

NOTE: If Supporting Information files are included with your article, note that these are not copyedited and will be published as they are submitted. Please ensure that these files are legible and of high quality (at least 300 dpi) in an easily accessible file format. For this reason, please be aware that any references listed in an SI file will not be indexed. For more information, see our Supporting Information guidelines:

https://journals.plos.org/plosbiology/s/supporting-information

*Published Peer Review History*

Please note that you may have the opportunity to make the peer review history publicly available. The record will include editor decision letters (with reviews) and your responses to reviewer comments. If eligible, we will contact you to opt in or out. Please see here for more details:

https://plos.org/published-peer-review-history/

*Press*

Should you, your institution's press office or the journal office choose to press release your paper, please ensure you have opted out of Early Article Posting on the submission form. We ask that you notify us as soon as possible if you or your institution is planning to press release the article.

*Protocols deposition*

To enhance the reproducibility of your results, we recommend that if applicable you deposit your laboratory protocols in protocols.io, where a protocol can be assigned its own identifier (DOI) such that it can be cited independently in the future. Additionally, PLOS ONE offers an option for publishing peer-reviewed Lab Protocol articles, which describe protocols hosted on protocols.io. Read more information on sharing protocols at https://plos.org/protocols?utm_medium=editorial-email&utm_source=authorletters&utm_campaign=protocols

Please do not hesitate to contact me should you have any questions.

Sincerely,

Christian

Christian Schnell, PhD

Senior Editor

cschnell@plos.org

PLOS Biology

Revision 3

Attachments
Attachment
Submitted filename: Zhang_RESPONSES_auresp_3.docx
Decision Letter - Christian Schnell, PhD, Editor

Dear Ziad,

Thank you for the submission of your revised Research Article "Foveal neurons of the monkey superior colliculus signal trans-saccadic prediction errors" for publication in PLOS Biology. On behalf of my colleagues and the Academic Editor, Christopher Pack, I am pleased to say that we can in principle accept your manuscript for publication, provided you address any remaining formatting and reporting issues. These will be detailed in an email you should receive within 2-3 business days from our colleagues in the journal operations team; no action is required from you until then. Please note that we will not be able to formally accept your manuscript and schedule it for publication until you have completed any requested changes.

Please take a minute to log into Editorial Manager at http://www.editorialmanager.com/pbiology/, click the "Update My Information" link at the top of the page, and update your user information to ensure an efficient production process.

PRESS

We frequently collaborate with press offices. If your institution or institutions have a press office, please notify them about your upcoming paper at this point, to enable them to help maximise its impact. If the press office is planning to promote your findings, we would be grateful if they could coordinate with biologypress@plos.org. If you have previously opted in to the early version process, we ask that you notify us immediately of any press plans so that we may opt out on your behalf.

We also ask that you take this opportunity to read our Embargo Policy regarding the discussion, promotion and media coverage of work that is yet to be published by PLOS. As your manuscript is not yet published, it is bound by the conditions of our Embargo Policy. Please be aware that this policy is in place both to ensure that any press coverage of your article is fully substantiated and to provide a direct link between such coverage and the published work. For full details of our Embargo Policy, please visit http://www.plos.org/about/media-inquiries/embargo-policy/.

Thank you again for choosing PLOS Biology for publication and supporting Open Access publishing. We look forward to publishing your study. 

Sincerely, 

Christian

Christian Schnell, PhD

Senior Editor

PLOS Biology

cschnell@plos.org

Open letter on the publication of peer review reports

PLOS recognizes the benefits of transparency in the peer review process. Therefore, we enable the publication of all of the content of peer review and author responses alongside final, published articles. Reviewers remain anonymous, unless they choose to reveal their names.

We encourage other journals to join us in this initiative. We hope that our action inspires the community, including researchers, research funders, and research institutions, to recognize the benefits of published peer review reports for all parts of the research system.

Learn more at ASAPbio .