Life Identification Numbers: A strain nomenclature approach to aid epidemiological surveillance of bacterial pathogens

• Federica Palma ,

  Contributed equally to this work with: Federica Palma, Melanie Hennart

  Roles Data curation, Project administration, Writing – original draft, Writing – review & editing

  Affiliations Institut Pasteur, Université Paris Cité, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France, Institut Pasteur, Université Paris Cité, Biological Resource Center of Institut Pasteur, Paris, France

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• Melanie Hennart ,

  Contributed equally to this work with: Federica Palma, Melanie Hennart

  Roles Data curation, Formal analysis, Methodology, Software, Visualization, Writing – original draft

  Affiliation Institut Pasteur, Université Paris Cité, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France

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• Keith A. Jolley,

  Roles Software, Writing – review & editing

  Affiliation Department of Biology, University of Oxford, Oxford, United Kingdom

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• Chiara Crestani,

  Roles Data curation, Formal analysis, Visualization, Writing – review & editing

  Affiliation Institut Pasteur, Université Paris Cité, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France

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• Kelly L. Wyres,

  Roles Visualization, Writing – review & editing, Formal analysis

  Affiliations Department of Infectious Diseases, School of Translational Medicine, Monash University, Melbourne, Victoria, Australia, Centre to Impact AMR, Monash University, Clayton, Victoria, Australia, Department of Infection Biology, London School of Hygiene and Tropical Medicine, London, United Kingdom

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• Sebastien Bridel,

  Roles Data curation, Formal analysis, Visualization

  Affiliation Institut Pasteur, Université Paris Cité, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France

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• Corin A. Yeats,

  Roles Data curation, Software

  Affiliation Centre for Genomic Pathogen Surveillance, Pandemic Sciences Institute, University of Oxford, Oxford, United Kingdom

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• Bryan Brancotte,

  Roles Software

  Affiliation Institut Pasteur, Université Paris Cité, Bioinformatics and Biostatistics Hub, Paris, France

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• Brice Raffestin,

  Roles Software

  Affiliation Institut Pasteur, Université Paris Cité, HPC Core Facility, Paris, France

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• Sophia David,

  Roles Data curation

  Affiliation Centre for Genomic Pathogen Surveillance, Pandemic Sciences Institute, University of Oxford, Oxford, United Kingdom

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• Margaret M.C. Lam,

  Roles Data curation, Formal analysis, Writing – review & editing

  Affiliations Department of Infectious Diseases, School of Translational Medicine, Monash University, Melbourne, Victoria, Australia, Centre to Impact AMR, Monash University, Clayton, Victoria, Australia

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• Radosław Izdebski,

  Roles Data curation, Writing – review & editing

  Affiliation Department of Molecular Microbiology, National Medicines Institute, Warsaw, Poland

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• Virginie Passet,

  Roles Data curation

  Affiliation Institut Pasteur, Université Paris Cité, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France

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• Carla Rodrigues,

  Roles Data curation, Formal analysis, Writing – review & editing

  Affiliation Institut Pasteur, Université Paris Cité, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France

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• Martin Rethoret-Pasty,

  Roles Data curation, Software

  Affiliation Institut Pasteur, Université Paris Cité, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France

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• Audrey Combary,

  Roles Data curation

  Affiliation Institut Pasteur, Université Paris Cité, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France

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• Solene Cottis,

  Roles Project administration, Writing – original draft

  Affiliation Institut Pasteur, Université Paris Cité, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France

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• Martin C.J. Maiden,

  Roles Funding acquisition, Project administration, Software, Writing – review & editing

  Affiliation Department of Biology, University of Oxford, Oxford, United Kingdom

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• David M. Aanensen,

  Roles Conceptualization, Data curation, Funding acquisition, Software

  Affiliation Centre for Genomic Pathogen Surveillance, Pandemic Sciences Institute, University of Oxford, Oxford, United Kingdom

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• Kathryn E. Holt,

  Roles Conceptualization, Funding acquisition, Supervision, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Department of Infectious Diseases, School of Translational Medicine, Monash University, Melbourne, Victoria, Australia, Department of Infection Biology, London School of Hygiene and Tropical Medicine, London, United Kingdom

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• Alexis Criscuolo,

  Roles Conceptualization, Formal analysis, Methodology, Software, Supervision, Validation, Writing – review & editing

  Affiliation Institut Pasteur, Université Paris Cité, Biological Resource Center of Institut Pasteur, Paris, France

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•  [ ... ],
• Sylvain Brisse

  Roles Conceptualization, Data curation, Funding acquisition, Investigation, Methodology, Project administration, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: sylvain.brisse@pasteur.fr

  Affiliations Institut Pasteur, Université Paris Cité, Biodiversity and Epidemiology of Bacterial Pathogens, Paris, France, Institut Pasteur, Université Paris Cité, Biological Resource Center of Institut Pasteur, Paris, France

  https://orcid.org/0000-0002-2516-2108

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