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Open Access
Peer-reviewed
Methods and Resources
Methods and Resources report novel methods, substantial improvements to current methodologies, or informational datasets.
Cell2Spatial is a computational framework that maps single cells to spatial transcriptomic spots to reconstruct tissue architecture
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Huamei Li,
Roles Data curation, Formal analysis, Methodology, Software, Writing – original draft, Writing – review & editing
Affiliation Department of Rheumatology and Immunology, Nanjing Drum Tower Hospital, Affiliated Hospital of Medical School, Nanjing University, Nanjing, China
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Jingchao Liu,
Roles Data curation, Formal analysis, Software
Affiliations TCRX (KeShiHua) Therapeutics Co. Ltd., Beijing, China, Department of General Surgery, Sir Run-Run Shaw Hospital, Zhejiang University, Hangzhou, China
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Guige Wang,
Roles Data curation, Writing – original draft
Affiliation Department of Thoracic Surgery, Peking Union Medical College Hospital, Beijing, China
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Zhenyu Liu,
Roles Data curation, Visualization
Affiliation Department of Rheumatology and Immunology, Nanjing Drum Tower Hospital, Affiliated Hospital of Medical School, Nanjing University, Nanjing, China
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Meng Cao,
Roles Visualization
Affiliation Department of General Surgery, Nanjing Drum Tower Hospital, Affiliated Hospital of Medical School, Nanjing University, Nanjing, China
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Lingyun Sun ,
Roles Project administration, Supervision
* E-mail: lingyunsun@nju.edu.cn (LS); pengch@tcrximmune.cn (CP); liuyiyao@uestc.edu.cn (YL); mal1@uthscsa.edu (LM); qingx@tcrximmune.cn (QX)
Affiliation Department of Rheumatology and Immunology, Nanjing Drum Tower Hospital, Affiliated Hospital of Medical School, Nanjing University, Nanjing, China
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Cheng Peng ,
Roles Visualization, Writing – original draft, Writing – review & editing
* E-mail: lingyunsun@nju.edu.cn (LS); pengch@tcrximmune.cn (CP); liuyiyao@uestc.edu.cn (YL); mal1@uthscsa.edu (LM); qingx@tcrximmune.cn (QX)
Affiliation Department of Rheumatology and Immunology, Nanjing Drum Tower Hospital, Affiliated Hospital of Medical School, Nanjing University, Nanjing, China
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Yiyao Liu ,
Roles Funding acquisition, Project administration, Writing – review & editing
* E-mail: lingyunsun@nju.edu.cn (LS); pengch@tcrximmune.cn (CP); liuyiyao@uestc.edu.cn (YL); mal1@uthscsa.edu (LM); qingx@tcrximmune.cn (QX)
Affiliations Department of Biophysics, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, China, TCM Regulating Metabolic Diseases Key Laboratory of Sichuan Province, Hospital of Chengdu University of Traditional Chinese Medicine, Chengdu, China
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Liang Ma ,
Roles Conceptualization, Funding acquisition, Writing – review & editing
* E-mail: lingyunsun@nju.edu.cn (LS); pengch@tcrximmune.cn (CP); liuyiyao@uestc.edu.cn (YL); mal1@uthscsa.edu (LM); qingx@tcrximmune.cn (QX)
Affiliation Department of Pharmacology, Biggs Institute for Alzheimer’s and Neurodegenerative Disease, The University of Texas Health Science Center at San Antonio, San Antonio, Texas, United States of America
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Qing Xiong
Roles Conceptualization, Project administration
* E-mail: lingyunsun@nju.edu.cn (LS); pengch@tcrximmune.cn (CP); liuyiyao@uestc.edu.cn (YL); mal1@uthscsa.edu (LM); qingx@tcrximmune.cn (QX)
Affiliation Department of Rheumatology and Immunology, Nanjing Drum Tower Hospital, Affiliated Hospital of Medical School, Nanjing University, Nanjing, China
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Cell2Spatial is a computational framework that maps single cells to spatial transcriptomic spots to reconstruct tissue architecture
- Huamei Li,
- Jingchao Liu,
- Guige Wang,
- Zhenyu Liu,
- Meng Cao,
- Lingyun Sun,
- Cheng Peng,
- Yiyao Liu,
- Liang Ma,
- Qing Xiong
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- Published: November 17, 2025
- https://doi.org/10.1371/journal.pbio.3003477