Breaking the reproducibility barrier with standardized protocols for plant–microbiome research

• Vlastimil Novak,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Resources, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

  https://orcid.org/0000-0001-7890-4593

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• Peter F. Andeer,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Writing – original draft, Writing – review & editing

  Affiliation Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

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• Eoghan King,

  Roles Data curation, Formal analysis, Investigation, Methodology, Writing – review & editing

  Affiliations The DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America, Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM)–Instituto Nacional de Investigación y Tecnología Agraria y Alimentación (INIA/CSIC), Campus de Montegancedo, Madrid, Spain

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• Jacob Calabria,

  Roles Data curation, Investigation, Writing – review & editing

  Affiliation Faculty of Science, School of BioSciences, The University of Melbourne, Parkville, Australia

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• Connor Fitzpatrick,

  Roles Data curation, Investigation, Writing – review & editing

  Affiliation Department of Biology and Howard Hughes Medical Institute, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America

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• Jana M. Kelm,

  Roles Data curation, Investigation, Writing – review & editing

  Affiliation Institute for Bio- and Geosciences, Plant Sciences (IBG-2), Forschungszentrum Jülich GmbH, Jülich, Germany

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• Kathrin Wippel,

  Roles Data curation, Investigation, Writing – review & editing

  Affiliations Max Planck Institute for Plant Breeding Research, Cologne, Germany, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park Amsterdam, Amsterdam, The Netherlands

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• Suzanne M. Kosina,

  Roles Formal analysis, Validation, Writing – review & editing

  Affiliation Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

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• Benjamin P. Bowen,

  Roles Formal analysis, Writing – review & editing

  Affiliations Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America, The DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

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• Chris Daum,

  Roles Investigation, Resources, Writing – review & editing

  Affiliation The DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

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• Matthew Zane,

  Roles Investigation, Resources, Writing – review & editing

  Affiliation The DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

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• Archana Yadav,

  Roles Formal analysis, Visualization, Writing – review & editing

  Affiliation Earth and Environmental Sciences, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

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• Mingfei Chen,

  Roles Investigation, Writing – review & editing

  Affiliation Earth and Environmental Sciences, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

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• Dor Russ,

  Roles Investigation, Writing – review & editing

  Affiliation Department of Biology and Howard Hughes Medical Institute, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America

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• Catharine A. Adams,

  Roles Resources, Writing – review & editing

  Affiliations Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America, Department of Plant and Microbial Biology, University of California-Berkeley, Berkeley, California, United States of America

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• Trenton K. Owens,

  Roles Investigation, Writing – review & editing

  Affiliation Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

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• Bradie Lee,

  Roles Methodology, Writing – review & editing

  Affiliations The DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America, Department of Plant and Microbial Biology, University of California-Berkeley, Berkeley, California, United States of America

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• Yezhang Ding,

  Roles Investigation, Writing – review & editing

  Affiliation Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

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• Zineb Sordo,

  Roles Data curation, Formal analysis, Writing – review & editing

  Affiliation Computing Sciences Area, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

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• Romy Chakraborty,

  Roles Funding acquisition, Resources, Supervision, Writing – review & editing

  Affiliation Earth and Environmental Sciences, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

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• Simon Roux,

  Roles Data curation, Formal analysis, Supervision, Writing – review & editing

  Affiliation The DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

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• Adam M. Deutschbauer,

  Roles Formal analysis, Funding acquisition, Supervision, Writing – review & editing

  Affiliations Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America, Department of Plant and Microbial Biology, University of California-Berkeley, Berkeley, California, United States of America

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• Daniela Ushizima,

  Roles Data curation, Formal analysis, Supervision, Writing – review & editing

  Affiliation Computing Sciences Area, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

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• Karsten Zengler,

  Roles Conceptualization, Funding acquisition, Supervision, Writing – review & editing

  Affiliations Department of Pediatrics, University of California, San Diego, La Jolla, California, United States of America, Department of Bioengineering, University of California, San Diego, La Jolla, California, United States of America, Center for Microbiome Innovation, University of California, San Diego, La Jolla, California, United States of America, Program in Materials Science and Engineering, University of California, San Diego, La Jolla, California, United States of America

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• Borjana Arsova,

  Roles Data curation, Supervision, Writing – review & editing

  Affiliation Institute for Bio- and Geosciences, Plant Sciences (IBG-2), Forschungszentrum Jülich GmbH, Jülich, Germany

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• Jeffery L. Dangl,

  Roles Data curation, Supervision, Writing – review & editing

  Affiliation Department of Biology and Howard Hughes Medical Institute, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America

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• Paul Schulze-Lefert,

  Roles Data curation, Supervision, Writing – review & editing

  Affiliation Max Planck Institute for Plant Breeding Research, Cologne, Germany

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• Michelle Watt,

  Roles Data curation, Resources, Supervision, Writing – review & editing

  Affiliation Faculty of Science, School of BioSciences, The University of Melbourne, Parkville, Australia

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• John P. Vogel ,

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: jpvogel@lbl.gov (JPV); trnorthen@lbl.gov (TRN)

  Affiliation The DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

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•  [ ... ],
• Trent R. Northen

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: jpvogel@lbl.gov (JPV); trnorthen@lbl.gov (TRN)

  Affiliations Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America, The DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

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