Quantifying the effects of antibiotic resistance and within-host competition on strain fitness in Streptococcus pneumoniae

• Aswin Krishna,

  Roles Conceptualization, Formal analysis, Writing – original draft, Writing – review & editing

  Affiliation Institute of Integrative Biology, Department of Environmental Systems Science, ETH Zurich, Zurich, Switzerland

  https://orcid.org/0009-0007-5973-7890

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• Gerry Tonkin-Hill,

  Roles Writing – review & editing

  Affiliations Peter MacCallum Cancer Centre, Melbourne, Victoria, Australia, Sir Peter MacCallum Department of Oncology, The University of Melbourne, Melbourne, Victoria, Australia, Department of Microbiology and Immunology, The University of Melbourne, at the Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia

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• Thibaut Morel-Journel,

  Roles Writing – review & editing

  Affiliation Université Sorbonne Paris Nord, Université Paris Cité, INSERM, IAME, Bobigny, France

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• Stephen Bentley,

  Roles Data curation, Writing – review & editing

  Affiliation Wellcome Sanger Institute, Cambridge, United Kingdom

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• Paul Turner,

  Roles Data curation, Writing – review & editing

  Affiliation Centre for Tropical Medicine and Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom

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• François Blanquart,

  Roles Writing – review & editing

  Affiliation Center for Interdisciplinary Research in Biology, CNRS, Collège de France, PSL Research University, Paris, France

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• Sonja Lehtinen

  Roles Conceptualization, Funding acquisition, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: sonja.lehtinen@unil.ch

  Affiliations Institute of Integrative Biology, Department of Environmental Systems Science, ETH Zurich, Zurich, Switzerland, Department of Computational Biology, University of Lausanne, Lausanne, Switzerland, Swiss Institute of Bioinformatics, Lausanne, Switzerland

  https://orcid.org/0000-0002-4236-828X

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