Community-based reconstruction and simulation of a full-scale model of the rat hippocampus CA1 region

• Armando Romani ,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: romani.armando@gmail.com (AR); michele.migliore@cnr.it (MM); kali@koki.hu (SK); henry.markram@epfl.ch (HM)

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  https://orcid.org/0000-0001-6388-4286

  ⨯
• Alberto Antonietti,

  Roles Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  https://orcid.org/0000-0003-0388-6321

  ⨯
• Davide Bella,

  Roles Data curation, Formal analysis, Investigation, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  https://orcid.org/0000-0002-7389-0337

  ⨯
• Julian Budd,

  Roles Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland, HUN-REN Institute of Experimental Medicine (KOKI), Budapest, Hungary

  https://orcid.org/0000-0001-8614-9989

  ⨯
• Elisabetta Giacalone,

  Roles Formal analysis, Investigation, Validation, Writing – original draft

  Affiliation Institute of Biophysics, National Research Council (CNR), Palermo, Italy

  https://orcid.org/0009-0006-1072-299X

  ⨯
• Kerem Kurban,

  Roles Data curation, Formal analysis, Investigation, Software, Validation, Visualization, Writing – original draft

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  https://orcid.org/0000-0003-4990-9541

  ⨯
• Sára Sáray,

  Roles Formal analysis, Investigation, Validation, Writing – original draft

  Affiliations HUN-REN Institute of Experimental Medicine (KOKI), Budapest, Hungary, Faculty of Information Technology and Bionics, Pázmány Péter Catholic University, Budapest, Hungary

  https://orcid.org/0000-0002-4341-177X

  ⨯
• Marwan Abdellah,

  Roles Visualization

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  https://orcid.org/0000-0003-0751-2300

  ⨯
• Alexis Arnaudon,

  Roles Formal analysis

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  https://orcid.org/0000-0001-9486-1458

  ⨯
• Elvis Boci,

  Roles Visualization

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  https://orcid.org/0009-0002-5871-4164

  ⨯
• Cristina Colangelo,

  Roles Formal analysis, Validation, Writing – original draft

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  https://orcid.org/0009-0004-7974-5124

  ⨯
• Jean-Denis Courcol,

  Roles Supervision

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  https://orcid.org/0000-0002-9351-1461

  ⨯
• Thomas Delemontex,

  Roles Data curation, Formal analysis, Software

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  https://orcid.org/0000-0003-3218-5137

  ⨯
• András Ecker,

  Roles Formal analysis, Validation, Writing – review & editing

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  https://orcid.org/0000-0001-9635-4169

  ⨯
• Joanne Falck,

  Roles Data curation

  Affiliation UCL School of Pharmacy, University College London (UCL), London, United Kingdom

  https://orcid.org/0000-0003-2185-3750

  ⨯
• Cyrille Favreau,

  Roles Visualization

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  https://orcid.org/0000-0003-1381-1585

  ⨯
• Michael Gevaert,

  Roles Software

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  https://orcid.org/0000-0002-7547-3297

  ⨯
• Juan B. Hernando,

  Roles Software, Visualization

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  https://orcid.org/0000-0002-8562-8213

  ⨯
• Joni Herttuainen,

  Roles Software

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  https://orcid.org/0000-0001-7301-2350

  ⨯
• Genrich Ivaska,

  Roles Software

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  ⨯
• Lida Kanari,

  Roles Data curation, Formal analysis, Validation, Writing – original draft

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  https://orcid.org/0000-0002-9539-5070

  ⨯
• Anna-Kristin Kaufmann,

  Roles Data curation

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  https://orcid.org/0000-0002-6084-418X

  ⨯
• James Gonzalo King,

  Roles Software, Supervision

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  https://orcid.org/0000-0003-0906-8389

  ⨯
• Pramod Kumbhar,

  Roles Software

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  https://orcid.org/0000-0002-1756-801X

  ⨯
• Sigrun Lange,

  Roles Data curation, Writing – review & editing

  Affiliations UCL School of Pharmacy, University College London (UCL), London, United Kingdom, School of Life Sciences, University of Westminster, London, United Kingdom

  https://orcid.org/0000-0002-7193-3102

  ⨯
• Huanxiang Lu,

  Roles Data curation, Software

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  https://orcid.org/0000-0003-3377-9359

  ⨯
• Carmen Alina Lupascu,

  Roles Investigation

  Affiliation Institute of Biophysics, National Research Council (CNR), Palermo, Italy

  https://orcid.org/0000-0002-7870-5620

  ⨯
• Rosanna Migliore,

  Roles Investigation

  Affiliation Institute of Biophysics, National Research Council (CNR), Palermo, Italy

  https://orcid.org/0000-0001-9034-7849

  ⨯
• Fabien Petitjean,

  Roles Visualization

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  https://orcid.org/0000-0002-1321-4433

  ⨯
• Judit Planas,

  Roles Supervision, Visualization

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  https://orcid.org/0000-0002-8221-7988

  ⨯
• Pranav Rai,

  Roles Validation

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  https://orcid.org/0009-0007-3639-4530

  ⨯
• Srikanth Ramaswamy,

  Roles Supervision

  Affiliations Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland, Neural Circuits Laboratory, Biosciences Institute, Newcastle University, Newcastle upon Tyne, United Kingdom

  https://orcid.org/0000-0001-6642-7136

  ⨯
• Michael W. Reimann,

  Roles Investigation, Supervision

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  https://orcid.org/0000-0003-3455-2367

  ⨯
• Juan Luis Riquelme,

  Roles Software

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  https://orcid.org/0000-0003-4604-7405

  ⨯
• Nadir Román Guerrero,

  Roles Visualization, Writing – original draft

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  https://orcid.org/0000-0001-7528-2549

  ⨯
• Ying Shi,

  Roles Data curation

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  https://orcid.org/0000-0002-6442-9880

  ⨯
• Vishal Sood,

  Roles Software

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  https://orcid.org/0000-0002-2167-7710

  ⨯
• Mohameth François Sy,

  Roles Data curation, Supervision

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  https://orcid.org/0000-0002-4603-9838

  ⨯
• Werner Van Geit,

  Roles Investigation, Software, Supervision

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  https://orcid.org/0000-0002-2915-720X

  ⨯
• Liesbeth Vanherpe,

  Roles Investigation, Software

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  https://orcid.org/0000-0002-1226-0526

  ⨯
• Tamás F. Freund ,

  Roles Funding acquisition, Supervision

  ¶‡ These senior authors also contributed equally to this work.

  Affiliations HUN-REN Institute of Experimental Medicine (KOKI), Budapest, Hungary, Faculty of Information Technology and Bionics, Pázmány Péter Catholic University, Budapest, Hungary

  ⨯
• Audrey Mercer ,

  Roles Data curation, Funding acquisition, Supervision, Writing – review & editing

  ¶‡ These senior authors also contributed equally to this work.

  Affiliation UCL School of Pharmacy, University College London (UCL), London, United Kingdom

  https://orcid.org/0000-0002-5086-2560

  ⨯
• Eilif Muller ,

  Roles Supervision

  ¶‡ These senior authors also contributed equally to this work.

  Affiliations Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland, Department of Neurosciences, Faculty of Medicine, Université de Montréal, Montréal, Canada, Centre Hospitalier Universitaire (CHU) Sainte-Justine Research Center, Montréal, Canada, Mila Quebec AI Institute, Montréal, Canada

  https://orcid.org/0000-0003-4309-8266

  ⨯
• Felix Schürmann ,

  Roles Supervision

  ¶‡ These senior authors also contributed equally to this work.

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  https://orcid.org/0000-0001-5379-8560

  ⨯
• Alex M. Thomson ,

  Roles Data curation, Funding acquisition, Supervision, Writing – review & editing

  ¶‡ These senior authors also contributed equally to this work.

  Affiliation UCL School of Pharmacy, University College London (UCL), London, United Kingdom

  ⨯
• Michele Migliore ,

  Roles Conceptualization, Funding acquisition, Supervision, Writing – review & editing

  * E-mail: romani.armando@gmail.com (AR); michele.migliore@cnr.it (MM); kali@koki.hu (SK); henry.markram@epfl.ch (HM)

  ¶‡ These senior authors also contributed equally to this work.

  Affiliation Institute of Biophysics, National Research Council (CNR), Palermo, Italy

  https://orcid.org/0000-0002-7584-6292

  ⨯
• Szabolcs Káli ,

  Roles Conceptualization, Funding acquisition, Supervision, Writing – review & editing

  * E-mail: romani.armando@gmail.com (AR); michele.migliore@cnr.it (MM); kali@koki.hu (SK); henry.markram@epfl.ch (HM)

  ¶‡ These senior authors also contributed equally to this work.

  Affiliations HUN-REN Institute of Experimental Medicine (KOKI), Budapest, Hungary, Faculty of Information Technology and Bionics, Pázmány Péter Catholic University, Budapest, Hungary

  https://orcid.org/0000-0002-2740-6057

  ⨯
•  [ ... ],
• Henry Markram

  Roles Conceptualization, Funding acquisition, Methodology, Resources, Supervision, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: romani.armando@gmail.com (AR); michele.migliore@cnr.it (MM); kali@koki.hu (SK); henry.markram@epfl.ch (HM)

  ¶‡ These senior authors also contributed equally to this work.

  Affiliation Blue Brain Project, École polytechnique fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland

  https://orcid.org/0000-0001-6164-2590

  ⨯
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