Single-fly genome assemblies fill major phylogenomic gaps across the Drosophilidae Tree of Life

• Bernard Y. Kim ,

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: bernardkim@stanford.edu (BYK); dpetrov@stanford.edu (DAP)

  Affiliation Department of Biology, Stanford University, Stanford, California, United States of America

  https://orcid.org/0000-0002-5025-1292

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• Hannah R. Gellert,

  Roles Data curation, Formal analysis, Investigation, Methodology, Resources, Validation, Writing – original draft, Writing – review & editing

  Affiliation Department of Biology, Stanford University, Stanford, California, United States of America

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• Samuel H. Church,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Resources, Validation, Writing – original draft, Writing – review & editing

  Affiliation Department of Ecology and Evolutionary Biology, Yale University, New Haven, Connecticut United States of America

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• Anton Suvorov,

  Roles Formal analysis, Resources, Writing – original draft, Writing – review & editing

  Affiliation Department of Biological Sciences, Virginia Tech, Blacksburg, Virginia, United States of America

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• Sean S. Anderson,

  Roles Resources, Writing – review & editing

  Affiliation Department of Biology, University of North Carolina Chapel Hill, Chapel Hill, North Carolina, United States of America

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• Olga Barmina,

  Roles Resources, Writing – review & editing

  Affiliation Department of Evolution and Ecology, University of California Davis, Davis, California, United States of America

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• Sofia G. Beskid,

  Roles Resources, Writing – review & editing

  Affiliation Department of Biology, Stanford University, Stanford, California, United States of America

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• Aaron A. Comeault,

  Roles Resources, Writing – review & editing

  Affiliation School of Environmental and Natural Sciences, Bangor University, Bangor, United Kingdom

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• K. Nicole Crown,

  Roles Resources, Writing – review & editing

  Affiliation Department of Biology, Case Western Reserve University, Cleveland, Ohio, United States of America

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• Sarah E. Diamond,

  Roles Resources, Writing – review & editing

  Affiliation Department of Biology, Case Western Reserve University, Cleveland, Ohio, United States of America

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• Steve Dorus,

  Roles Resources, Writing – review & editing

  Affiliation Center for Reproductive Evolution, Department of Biology, Syracuse University, Syracuse, New York, United States of America

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• Takako Fujichika,

  Roles Resources, Writing – review & editing

  Affiliation Department of Biological Sciences, Tokyo Metropolitan University, Tokyo, Japan

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• James A. Hemker,

  Roles Resources, Writing – review & editing

  Affiliation Department of Developmental Biology, Stanford University, Stanford, California, United States of America

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• Jan Hrcek,

  Roles Resources, Writing – review & editing

  Affiliation Institute of Entomology, Biology Centre, Czech Academy of Sciences, České Budějovice, Czech Republic

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• Maaria Kankare,

  Roles Data curation, Resources, Writing – review & editing

  Affiliation Department of Biological and Environmental Science, University of Jyväskylä, Jyväskylä, Finland

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• Toru Katoh,

  Roles Resources, Writing – review & editing

  Affiliation Department of Biological Sciences, Hokkaido University, Sapporo, Japan

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• Karl N. Magnacca,

  Roles Resources, Writing – review & editing

  Affiliation Hawaii Invertebrate Program, Division of Forestry & Wildlife, Honolulu, Hawaii, United States of America

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• Ryan A. Martin,

  Roles Resources, Writing – review & editing

  Affiliation Department of Biology, Case Western Reserve University, Cleveland, Ohio, United States of America

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• Teruyuki Matsunaga,

  Roles Resources, Writing – review & editing

  Affiliation Department of Complexity Science and Engineering, The University of Tokyo, Tokyo, Japan

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• Matthew J. Medeiros,

  Roles Resources, Writing – review & editing

  Affiliation Pacific Biosciences Research Center, University of Hawaiʻi, Mānoa, Hawaii, United States of America

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• Danny E. Miller,

  Roles Resources, Writing – review & editing

  Affiliation Division of Genetic Medicine, Department of Pediatrics; Department of Laboratory Medicine and Pathology, University of Washington, Seattle, Washington, United States of America

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• Scott Pitnick,

  Roles Resources, Writing – review & editing

  Affiliation Center for Reproductive Evolution, Department of Biology, Syracuse University, Syracuse, New York, United States of America

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• Michele Schiffer,

  Roles Resources, Writing – review & editing

  Affiliation Daintree Rainforest Observatory, James Cook University, Townsville, Australia

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• Sara Simoni,

  Roles Resources, Writing – review & editing

  Affiliation Department of Biology, Stanford University, Stanford, California, United States of America

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• Tessa E. Steenwinkel,

  Roles Resources, Writing – review & editing

  Affiliation Baylor College of Medicine, Houston, Texas, United States of America

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• Zeeshan A. Syed,

  Roles Data curation, Resources, Writing – review & editing

  Affiliation Center for Reproductive Evolution, Department of Biology, Syracuse University, Syracuse, New York, United States of America

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• Aya Takahashi,

  Roles Resources, Writing – review & editing

  Affiliation Department of Biological Sciences, Tokyo Metropolitan University, Tokyo, Japan

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• Kevin H-C. Wei,

  Roles Resources, Writing – review & editing

  Affiliation Department of Zoology, The University of British Columbia, Vancouver, Canada

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• Tsuya Yokoyama,

  Roles Resources, Writing – review & editing

  Affiliation Department of Biology, Stanford University, Stanford, California, United States of America

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• Michael B. Eisen,

  Roles Funding acquisition, Investigation, Resources, Writing – review & editing

  Affiliations Department of Cell and Molecular Biology, University of California Berkeley, Berkeley, California, United States of America, Howard Hughes Medical Institute, University of California Berkeley, Berkeley, California, United States of America

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• Artyom Kopp,

  Roles Data curation, Investigation, Resources, Writing – review & editing

  Affiliation Department of Evolution and Ecology, University of California Davis, Davis, California, United States of America

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• Daniel Matute,

  Roles Funding acquisition, Investigation, Resources, Writing – review & editing

  Affiliation Department of Biology, University of North Carolina Chapel Hill, Chapel Hill, North Carolina, United States of America

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• Darren J. Obbard,

  Roles Data curation, Investigation, Resources, Writing – review & editing

  Affiliation Institute of Ecology and Evolution, University of Edinburgh, Edinburgh, United Kingdom

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• Patrick M. O’Grady,

  Roles Data curation, Investigation, Resources, Writing – review & editing

  Affiliation Department of Entomology, Cornell University, Ithaca, New York, United States of America

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• Donald K. Price,

  Roles Data curation, Investigation, Resources, Writing – review & editing

  Affiliation School of Life Sciences, University of Nevada Las Vegas, Las Vegas, Nevada, United States of America

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• Masanori J. Toda,

  Roles Data curation, Investigation, Resources, Writing – review & editing

  Affiliation Hokkaido University Museum, Hokkaido University, Sapporo, Japan

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• Thomas Werner,

  Roles Data curation, Investigation, Resources, Writing – review & editing

  Affiliation Department of Biological Sciences, Michigan Technological University, Houghton, Michigan, United States of America

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•  [ ... ],
• Dmitri A. Petrov

  Roles Conceptualization, Funding acquisition, Investigation, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: bernardkim@stanford.edu (BYK); dpetrov@stanford.edu (DAP)

  Affiliations Department of Biology, Stanford University, Stanford, California, United States of America, CZ Biohub, Investigator, San Francisco, California, United States of America

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