scapGNN: A graph neural network–based framework for active pathway and gene module inference from single-cell multi-omics data

• Xudong Han,

  Roles Data curation, Investigation, Software, Validation, Visualization, Writing – original draft

  Affiliations State Key Laboratory of Reproductive Medicine and Offspring Health, School of Medicine, Southeast University, Nanjing, China, Department of Histology and Embryology, State Key Laboratory of Reproductive Medicine and Offspring Health, Nanjing Medical University, Nanjing, China

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• Bing Wang,

  Roles Data curation, Investigation, Visualization

  Affiliations State Key Laboratory of Reproductive Medicine and Offspring Health, School of Medicine, Southeast University, Nanjing, China, Department of Histology and Embryology, State Key Laboratory of Reproductive Medicine and Offspring Health, Nanjing Medical University, Nanjing, China

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• Chenghao Situ,

  Roles Formal analysis, Investigation

  Affiliation Department of Histology and Embryology, State Key Laboratory of Reproductive Medicine and Offspring Health, Nanjing Medical University, Nanjing, China

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• Yaling Qi,

  Roles Formal analysis, Investigation

  Affiliation Department of Histology and Embryology, State Key Laboratory of Reproductive Medicine and Offspring Health, Nanjing Medical University, Nanjing, China

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• Hui Zhu ,

  Roles Conceptualization, Data curation, Funding acquisition, Investigation, Project administration, Writing – review & editing

  * E-mail: njzhuhui@njmu.edu.cn (HZ); yanli@njmu.edu.cn (YL); guo_xuejiang@njmu.edu.cn (XG)

  Affiliation Department of Histology and Embryology, State Key Laboratory of Reproductive Medicine and Offspring Health, Nanjing Medical University, Nanjing, China

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• Yan Li ,

  Roles Conceptualization, Data curation, Funding acquisition, Investigation, Project administration, Writing – review & editing

  * E-mail: njzhuhui@njmu.edu.cn (HZ); yanli@njmu.edu.cn (YL); guo_xuejiang@njmu.edu.cn (XG)

  Affiliation Department of Clinical Laboratory, Sir Run Run Hospital, Nanjing Medical University, Nanjing, China

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• Xuejiang Guo

  Roles Conceptualization, Data curation, Funding acquisition, Investigation, Project administration, Resources, Software, Writing – review & editing

  * E-mail: njzhuhui@njmu.edu.cn (HZ); yanli@njmu.edu.cn (YL); guo_xuejiang@njmu.edu.cn (XG)

  Affiliations State Key Laboratory of Reproductive Medicine and Offspring Health, School of Medicine, Southeast University, Nanjing, China, Department of Histology and Embryology, State Key Laboratory of Reproductive Medicine and Offspring Health, Nanjing Medical University, Nanjing, China

  https://orcid.org/0000-0002-0475-5705

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