Multidrug-resistant E. coli encoding high genetic diversity in carbohydrate metabolism genes displace commensal E. coli from the intestinal tract

• Christopher H. Connor,

  Roles Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Institute of Microbiology and Infection, College of Medical and Dental Science, University of Birmingham, Birmingham, United Kingdom, International Microbiome Centre, University of Calgary, Calgary, Canada

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• Amanda Z. Zucoloto,

  Roles Formal analysis, Methodology, Supervision, Writing – review & editing

  Affiliations International Microbiome Centre, University of Calgary, Calgary, Canada, Department of Critical Care Medicine, Cumming School of Medicine, University of Calgary, Calgary, Canada, Calvin, Phoebe, and Joan Snyder Institute for Chronic Diseases, Cumming School of Medicine, University of Calgary, Calgary, Canada

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• John T. Munnoch,

  Roles Formal analysis, Investigation, Methodology, Visualization, Writing – review & editing

  Affiliation Strathclyde Institute of Pharmaceutical and Biomedical Science, University of Strathclyde, Glasgow, United Kingdom

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• Ian-Ling Yu,

  Roles Investigation, Methodology, Writing – review & editing

  Affiliation Department of Critical Care Medicine, Cumming School of Medicine, University of Calgary, Calgary, Canada

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• Jukka Corander,

  Roles Conceptualization, Methodology, Software, Writing – original draft, Writing – review & editing

  Affiliations Department of Biostatistics, Institute of Basic Medical Sciences, University of Oslo, Oslo, Norway, Parasites and Microbes, Wellcome Sanger Institute, Cambridge, United Kingdom, Helsinki Institute of Information Technology, Department of Mathematics and Statistics, University of Helsinki, Helsinki, Finland

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• Paul A. Hoskisson,

  Roles Formal analysis, Funding acquisition, Investigation, Project administration, Resources, Supervision, Writing – review & editing

  Affiliation Strathclyde Institute of Pharmaceutical and Biomedical Science, University of Strathclyde, Glasgow, United Kingdom

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• Braedon McDonald ,

  Roles Investigation, Methodology, Project administration, Resources, Supervision, Writing – review & editing

  * E-mail: bamcdona@ucalgary.ca (BM); a.mcnally.1@bham.ac.uk (AM)

  Affiliations International Microbiome Centre, University of Calgary, Calgary, Canada, Department of Critical Care Medicine, Cumming School of Medicine, University of Calgary, Calgary, Canada, Calvin, Phoebe, and Joan Snyder Institute for Chronic Diseases, Cumming School of Medicine, University of Calgary, Calgary, Canada

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• Alan McNally

  Roles Conceptualization, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: bamcdona@ucalgary.ca (BM); a.mcnally.1@bham.ac.uk (AM)

  Affiliation Institute of Microbiology and Infection, College of Medical and Dental Science, University of Birmingham, Birmingham, United Kingdom

  https://orcid.org/0000-0002-3099-630X

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