A guide to the BRAIN Initiative Cell Census Network data ecosystem

• Michael Hawrylycz ,

  Roles Conceptualization, Formal analysis, Funding acquisition, Supervision, Writing – original draft

  * E-mail: mikeh@alleninstitute.org (MH); mmartone@ucsd.edu (MEM)

  Affiliation Allen Institute for Brain Science, Seattle, Washington, United States of America

  https://orcid.org/0000-0002-5741-8024

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• Maryann E. Martone ,

  Roles Conceptualization, Data curation, Writing – original draft

  * E-mail: mikeh@alleninstitute.org (MH); mmartone@ucsd.edu (MEM)

  Affiliations Department of Neuroscience, University of California San Diego, San Diego, California, United States of America, San Francisco Veterans Affairs Medical Center, San Francisco, California, United States of America

  https://orcid.org/0000-0002-8406-3871

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• Giorgio A. Ascoli,

  Roles Investigation, Resources, Writing – original draft

  Affiliation Bioengineering Department and Center for Neural Informatics, Structures, & Plasticity, Volgenau School of Engineering, George Mason University, Fairfax, Virginia, United States of America

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• Jan G. Bjaalie,

  Roles Investigation, Resources, Software, Visualization, Writing – original draft

  Affiliation Institute of Basic Medical Sciences, University of Oslo, Oslo, Norway

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• Hong-Wei Dong,

  Roles Investigation, Resources, Supervision, Writing – original draft

  Affiliation UCLA Brain Research & Artificial Intelligence Nexus, Department of Neurobiology, David Geffen School of Medicine at University of California, Los Angeles, California, United States of America

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• Satrajit S. Ghosh,

  Roles Resources, Software, Writing – original draft

  Affiliation McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America

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• Jesse Gillis,

  Roles Data curation, Formal analysis, Software

  Affiliation Department of Physiology, University of Toronto, Toronto, Ontario, Canada

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• Ronna Hertzano,

  Roles Resources, Software, Visualization, Writing – original draft

  Affiliations Department of Otorhinolaryngology Head and Neck Surgery, University of Maryland School of Medicine, Baltimore, Maryland, United States of America, Department of Anatomy and Neurobiology, University of Maryland School of Medicine, Baltimore, Maryland, United States of America, Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America

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• David R. Haynor,

  Roles Writing – original draft, Writing – review & editing

  Affiliation Department of Radiology, University of Washington, Seattle, Washington, United States of America

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• Patrick R. Hof,

  Roles Investigation, Writing – original draft, Writing – review & editing

  Affiliation Nash Family Department of Neuroscience and Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, New York, United States of America

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• Yongsoo Kim,

  Roles Resources, Software, Visualization

  Affiliation Department of Neural and Behavioral Sciences, College of Medicine, The Pennsylvania State University, Hershey, Pennsylvania, United States of America

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• Ed Lein,

  Roles Funding acquisition, Investigation, Supervision, Writing – original draft, Writing – review & editing

  Affiliation Allen Institute for Brain Science, Seattle, Washington, United States of America

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• Yufeng Liu,

  Roles Software, Visualization, Writing – original draft

  Affiliation SEU-Allen Institute Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, Jiangsu Province, China

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• Jeremy A. Miller,

  Roles Formal analysis, Resources, Validation

  Affiliation Allen Institute for Brain Science, Seattle, Washington, United States of America

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• Partha P. Mitra,

  Roles Funding acquisition, Investigation, Resources, Software, Writing – original draft

  Affiliation Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, United States of America

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• Eran Mukamel,

  Roles Formal analysis, Software

  Affiliation Department of Cognitive Science, University of California, San Diego, La Jolla, California, United States of America

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• Lydia Ng,

  Roles Data curation, Formal analysis, Funding acquisition, Software

  Affiliation Allen Institute for Brain Science, Seattle, Washington, United States of America

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• David Osumi-Sutherland,

  Roles Data curation, Formal analysis, Software

  Affiliation European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom

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• Hanchuan Peng,

  Roles Investigation, Software, Visualization, Writing – original draft

  Affiliation SEU-Allen Institute Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, Jiangsu Province, China

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• Patrick L. Ray,

  Roles Data curation, Formal analysis, Software

  Affiliation Allen Institute for Brain Science, Seattle, Washington, United States of America

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• Raymond Sanchez,

  Roles Data curation, Formal analysis, Software, Visualization, Writing – original draft

  Affiliation Allen Institute for Brain Science, Seattle, Washington, United States of America

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• Aviv Regev,

  Roles Investigation, Validation, Writing – review & editing

  Affiliation Genentech, South San Francisco, California, United States of America

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• Alex Ropelewski,

  Roles Data curation, Resources, Software

  Affiliation Pittsburgh Supercomputing Center, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America

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• Richard H. Scheuermann,

  Roles Data curation, Formal analysis, Software, Visualization

  Affiliation J. Craig Venter Institute, La Jolla, California, United States of America

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• Shawn Zheng Kai Tan,

  Roles Data curation, Formal analysis, Software

  Affiliation European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom

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• Carol L. Thompson,

  Roles Conceptualization, Data curation, Resources, Supervision

  Affiliation Allen Institute for Brain Science, Seattle, Washington, United States of America

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• Timothy Tickle,

  Roles Data curation, Software, Writing – original draft

  Affiliation Data Sciences Platform, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America

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• Hagen Tilgner,

  Roles Investigation, Writing – original draft

  Affiliation Feil Family Brain and Mind Research Institute, Weill Cornell Medicine, New York, New York, United States of America

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• Merina Varghese,

  Roles Formal analysis, Writing – original draft

  Affiliation Nash Family Department of Neuroscience and Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, New York, United States of America

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• Brock Wester,

  Roles Resources, Software, Writing – original draft

  Affiliation Research and Exploratory Development Department, Johns Hopkins University Applied Physics Laboratory, Laurel, Maryland, United States of America

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• Owen White,

  Roles Data curation, Resources, Software, Supervision

  Affiliation Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America

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• Hongkui Zeng,

  Roles Funding acquisition, Investigation, Supervision

  Affiliation Allen Institute for Brain Science, Seattle, Washington, United States of America

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• Brian Aevermann,

  Roles Data curation, Software

  Affiliation Chan Zuckerberg Initiative, Redwood City, California, United States of America

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• David Allemang,

  Roles Resources, Software

  Affiliation Kitware Inc., Albany, New York, United States of America

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• Seth Ament,

  Roles Data curation, Resources, Software, Visualization

  Affiliation Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America

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• Thomas L. Athey,

  Roles Software, Visualization

  Affiliation Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland, United States of America

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• Cody Baker,

  Roles Software, Visualization

  Affiliation CatalystNeuro, Benicia, California, United States of America

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• Katherine S. Baker,

  Roles Data curation, Software

  Affiliation Allen Institute for Brain Science, Seattle, Washington, United States of America

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• Pamela M. Baker,

  Roles Data curation, Resources

  Affiliation Allen Institute for Brain Science, Seattle, Washington, United States of America

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• Anita Bandrowski,

  Roles Data curation, Resources, Software

  Affiliation Department of Neuroscience, University of California San Diego, San Diego, California, United States of America

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• Samik Banerjee,

  Roles Software, Visualization

  Affiliation Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, United States of America

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• Prajal Bishwakarma,

  Roles Data curation, Resources

  Affiliation Allen Institute for Brain Science, Seattle, Washington, United States of America

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• Ambrose Carr,

  Roles Resources, Software, Visualization

  Affiliation Chan Zuckerberg Initiative, Redwood City, California, United States of America

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• Min Chen,

  Roles Software, Visualization

  Affiliation Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America

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• Roni Choudhury,

  Roles Software, Visualization

  Affiliation Kitware Inc., Albany, New York, United States of America

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• Jonah Cool,

  Roles Project administration, Software, Visualization

  Affiliation Chan Zuckerberg Initiative, Redwood City, California, United States of America

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• Heather Creasy,

  Roles Data curation, Resources, Software

  Affiliation Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America

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• Florence D’Orazi,

  Roles Project administration

  Affiliation Chan Zuckerberg Initiative, Redwood City, California, United States of America

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• Kylee Degatano,

  Roles Data curation, Resources

  Affiliation Data Sciences Platform, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America

  ⨯
• Benjamin Dichter,

  Roles Formal analysis, Software

  Affiliation CatalystNeuro, Benicia, California, United States of America

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• Song-Lin Ding,

  Roles Formal analysis, Resources, Visualization

  Affiliation Allen Institute for Brain Science, Seattle, Washington, United States of America

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• Tim Dolbeare,

  Roles Resources, Software, Visualization

  Affiliation Allen Institute for Brain Science, Seattle, Washington, United States of America

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• Joseph R. Ecker,

  Roles Funding acquisition, Investigation, Supervision

  Affiliation Genomic Analysis Laboratory, Howard Hughes Medical Institute, The Salk Institute for Biological Studies La Jolla, California, United States of America

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• Rongxin Fang,

  Roles Formal analysis, Software

  Affiliation Bioinformatics and Systems Biology Graduate Program, University of California San Diego, La Jolla, California, United States of America

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• Jean-Christophe Fillion-Robin,

  Roles Resources, Software, Visualization

  Affiliation Kitware Inc., Albany, New York, United States of America

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• Timothy P. Fliss,

  Roles Data curation, Resources, Software

  Affiliation Allen Institute for Brain Science, Seattle, Washington, United States of America

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• James Gee,

  Roles Investigation, Software, Visualization

  Affiliation Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America

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• Tom Gillespie,

  Roles Data curation, Formal analysis, Resources

  Affiliation Department of Neuroscience, University of California San Diego, San Diego, California, United States of America

  ⨯
• Nathan Gouwens,

  Roles Software, Visualization

  Affiliation Allen Institute for Brain Science, Seattle, Washington, United States of America

  ⨯
• Guo-Qiang Zhang,

  Roles Resources, Software, Writing – review & editing

  Affiliation Texas Institute for Restorative Neurotechnologies, The University of Texas Health Science Center at Houston, Houston, Texas, United States of America

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• Yaroslav O. Halchenko,

  Roles Formal analysis, Software

  Affiliation Department of Psychological and Brain Sciences, Dartmouth College, Hannover, New Hampshire, United States of America

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• Nomi L. Harris,

  Roles Project administration, Writing – review & editing

  Affiliation Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

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• Brian R. Herb,

  Roles Data curation, Resources, Software, Visualization

  Affiliation Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America

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• Houri Hintiryan,

  Roles Formal analysis, Software, Visualization

  Affiliation UCLA Brain Research & Artificial Intelligence Nexus, Department of Neurobiology, David Geffen School of Medicine at University of California, Los Angeles, California, United States of America

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• Gregory Hood,

  Roles Data curation, Resources, Software, Visualization

  Affiliation Pittsburgh Supercomputing Center, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America

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• Sam Horvath,

  Roles Software, Visualization

  Affiliation Kitware Inc., Albany, New York, United States of America

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• Bingxing Huo,

  Roles Data curation, Formal analysis, Resources, Visualization

  Affiliation Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, United States of America

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• Dorota Jarecka,

  Roles Data curation, Resources, Software

  Affiliation McGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America

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• Shengdian Jiang,

  Roles Software, Visualization

  Affiliation SEU-Allen Institute Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, Jiangsu Province, China

  ⨯
• Farzaneh Khajouei,

  Roles Data curation, Resources, Software

  Affiliation Data Sciences Platform, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America

  ⨯
• Elizabeth A. Kiernan,

  Roles Data curation, Resources

  Affiliation Data Sciences Platform, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America

  ⨯
• Huseyin Kir,

  Roles Data curation, Formal analysis, Resources

  Affiliation European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom

  ⨯
• Lauren Kruse,

  Roles Project administration, Supervision

  Affiliation Allen Institute for Brain Science, Seattle, Washington, United States of America

  ⨯
• Changkyu Lee,

  Roles Formal analysis, Software, Validation

  Affiliation Allen Institute for Brain Science, Seattle, Washington, United States of America

  ⨯
• Boudewijn Lelieveldt,

  Roles Formal analysis, Resources, Software, Visualization

  Affiliations Department of Intelligent Systems, Delft University of Technology, Delft, the Netherlands, Department of Radiology, Leiden University Medical Center, Leiden, the Netherlands

  ⨯
• Yang Li,

  Roles Formal analysis, Software

  Affiliation Center for Epigenomics, Department of Cellular and Molecular Medicine, UC San Diego School of Medicine, La Jolla, California, United States of America

  ⨯
• Hanqing Liu,

  Roles Formal analysis, Resources, Software

  Affiliation Genomic Analysis Laboratory, Howard Hughes Medical Institute, The Salk Institute for Biological Studies La Jolla, California, United States of America

  ⨯
• Lijuan Liu,

  Roles Data curation, Software

  Affiliation SEU-Allen Institute Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, Jiangsu Province, China

  ⨯
• Anup Markuhar,

  Roles Resources, Software

  Affiliation Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America

  ⨯
• James Mathews,

  Roles Data curation, Formal analysis, Resources

  Affiliation Allen Institute for Brain Science, Seattle, Washington, United States of America

  ⨯
• Kaylee L. Mathews,

  Roles Data curation, Resources

  Affiliation Data Sciences Platform, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, United States of America

  ⨯
• Chris Mezias,

  Roles Resources, Software, Visualization

  Affiliation Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, United States of America

  ⨯
• Michael I. Miller,

  Roles Software, Visualization

  Affiliation Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland, United States of America

  ⨯
• Tyler Mollenkopf,

  Roles Data curation, Project administration

  Affiliation Allen Institute for Brain Science, Seattle, Washington, United States of America

  ⨯
• Shoaib Mufti,

  Roles Project administration, Software, Supervision

  Affiliation Allen Institute for Brain Science, Seattle, Washington, United States of America

  ⨯
• Christopher J. Mungall,

  Roles Data curation, Formal analysis, Funding acquisition, Supervision

  Affiliation Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

  ⨯
• Joshua Orvis,

  Roles Data curation, Resources, Software

  Affiliation Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America

  ⨯
• Maja A. Puchades,

  Roles Formal analysis, Software, Visualization

  Affiliation Institute of Basic Medical Sciences, University of Oslo, Oslo, Norway

  ⨯
• Lei Qu,

  Roles Formal analysis, Software, Visualization

  Affiliation SEU-Allen Institute Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, Jiangsu Province, China

  ⨯
• Joseph P. Receveur,

  Roles Data curation, Resources

  Affiliation Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America

  ⨯
• Bing Ren,

  Roles Investigation, Resources, Supervision

  Affiliations Center for Epigenomics, Department of Cellular and Molecular Medicine, UC San Diego School of Medicine, La Jolla, California, United States of America, Ludwig Institute for Cancer Research, La Jolla, California, United States of America

  ⨯
• Nathan Sjoquist,

  Roles Data curation, Software

  Affiliation Microsoft Corporation, Seattle, Washington, United States of America

  ⨯
• Brian Staats,

  Roles Conceptualization, Resources, Software

  Affiliation Allen Institute for Brain Science, Seattle, Washington, United States of America

  ⨯
• Daniel Tward,

  Roles Formal analysis, Resources, Software, Visualization

  Affiliation UCLA Brain Mapping Center, University of California, Los Angeles, California, United States of America

  ⨯
• Cindy T. J. van Velthoven,

  Roles Data curation, Formal analysis, Validation

  Affiliation Allen Institute for Brain Science, Seattle, Washington, United States of America

  ⨯
• Quanxin Wang,

  Roles Data curation, Resources, Visualization

  Affiliation Allen Institute for Brain Science, Seattle, Washington, United States of America

  ⨯
• Fangming Xie,

  Roles Resources, Software

  Affiliation Department of Chemistry and Biochemistry, University of California Los Angeles, California, United States of America

  ⨯
• Hua Xu,

  Roles Formal analysis, Resources, Software

  Affiliation School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, United States of America

  ⨯
• Zizhen Yao,

  Roles Data curation, Formal analysis, Investigation, Resources

  Affiliation Allen Institute for Brain Science, Seattle, Washington, United States of America

  ⨯
• Zhixi Yun,

  Roles Formal analysis, Software, Visualization

  Affiliation SEU-Allen Institute Joint Center, Institute for Brain and Intelligence, Southeast University, Nanjing, Jiangsu Province, China

  ⨯
• Yun Renee Zhang,

  Roles Formal analysis, Resources, Software, Visualization

  Affiliation J. Craig Venter Institute, La Jolla, California, United States of America

  ⨯
• W. Jim Zheng,

  Roles Formal analysis, Software

  Affiliation School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, United States of America

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•  [ ... ],
• Brian Zingg

  Roles Formal analysis, Software, Visualization

  Affiliation UCLA Brain Research & Artificial Intelligence Nexus, Department of Neurobiology, David Geffen School of Medicine at University of California, Los Angeles, California, United States of America

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