Systems biology elucidates the distinctive metabolic niche filled by the human gut microbe Eggerthella lenta

• Cecilia Noecker,

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Software, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Department of Microbiology & Immunology, University of California, San Francisco, San Francisco, California, United States of America

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• Juan Sanchez,

  Roles Data curation, Formal analysis, Investigation, Methodology, Writing – review & editing

  Affiliation Chan Zuckerberg Biohub–San Francisco, San Francisco, California, United States of America

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• Jordan E. Bisanz,

  Roles Investigation, Methodology, Writing – review & editing

  Current address: Department of Biochemistry and Molecular Biology, Pennsylvania State University, State College, Pennsylvania, United States of America

  Affiliation Department of Microbiology & Immunology, University of California, San Francisco, San Francisco, California, United States of America

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• Veronica Escalante,

  Roles Investigation, Writing – review & editing

  Affiliation Department of Microbiology & Immunology, University of California, San Francisco, San Francisco, California, United States of America

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• Margaret Alexander,

  Roles Investigation, Writing – review & editing

  Affiliation Department of Microbiology & Immunology, University of California, San Francisco, San Francisco, California, United States of America

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• Kai Trepka,

  Roles Formal analysis, Writing – review & editing

  Affiliation Department of Microbiology & Immunology, University of California, San Francisco, San Francisco, California, United States of America

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• Almut Heinken,

  Roles Formal analysis, Software, Writing – review & editing

  Current address: INSERM UMRS 1256, Nutrition, Genetics, and Environmental Risk Exposure (NGERE), University of Lorraine, Nancy, France

  Affiliation School of Medicine, National University of Ireland, Galway, Ireland

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• Yuanyuan Liu,

  Roles Data curation, Formal analysis, Investigation, Writing – review & editing

  Affiliation Department of Pathology, Stanford University, Stanford, California, United States of America

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• Dylan Dodd,

  Roles Data curation, Supervision, Writing – review & editing

  Affiliations Department of Pathology, Stanford University, Stanford, California, United States of America, Department of Microbiology & Immunology, Stanford University, Stanford, California, United States of America

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• Ines Thiele,

  Roles Software, Supervision, Writing – review & editing

  Affiliations School of Medicine, National University of Ireland, Galway, Ireland, Ryan Institute, University of Galway, Galway, Ireland, APC Microbiome Ireland, Cork, Ireland

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• Brian C. DeFelice,

  Roles Formal analysis, Methodology, Supervision, Writing – review & editing

  Affiliation Chan Zuckerberg Biohub–San Francisco, San Francisco, California, United States of America

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• Peter J. Turnbaugh

  Roles Conceptualization, Funding acquisition, Methodology, Supervision, Writing – review & editing

  * E-mail: peter.turnbaugh@ucsf.edu

  Affiliations Department of Microbiology & Immunology, University of California, San Francisco, San Francisco, California, United States of America, Chan Zuckerberg Biohub–San Francisco, San Francisco, California, United States of America

  https://orcid.org/0000-0002-0888-2875

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