AlphaFold2-multimer guided high-accuracy prediction of typical and atypical ATG8-binding motifs

Tarhan Ibrahim; Virendrasinh Khandare; Federico Gabriel Mirkin; Yasin Tumtas; Doryen Bubeck; Tolga O. Bozkurt

doi:10.1371/journal.pbio.3001962

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Methods and Resources report novel methods, substantial improvements to current methodologies, or informational datasets.

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AlphaFold2-multimer guided high-accuracy prediction of typical and atypical ATG8-binding motifs

Tarhan Ibrahim,

Roles Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

Affiliation Department of Life Sciences, Imperial College London, London, United Kingdom

https://orcid.org/0000-0002-2437-4723

⨯
Virendrasinh Khandare,

Roles Data curation, Formal analysis, Investigation, Methodology, Validation, Visualization, Writing – review & editing

Affiliations Department of Life Sciences, Imperial College London, London, United Kingdom, Department of Agrotechnology and Food Sciences, Biochemistry, Wageningen University and Research, Wageningen, the Netherlands

https://orcid.org/0000-0003-2673-6561

⨯
Federico Gabriel Mirkin,

Roles Data curation, Formal analysis, Investigation, Methodology, Resources, Validation, Visualization, Writing – review & editing

Affiliations Department of Life Sciences, Imperial College London, London, United Kingdom, INGEBI-CONICET, Ciudad Autonoma de Buenos Aires, Buenos Aires, Argentina
⨯
Yasin Tumtas,

Roles Conceptualization, Formal analysis, Investigation, Methodology, Resources, Software, Validation, Visualization, Writing – review & editing

Affiliation Department of Life Sciences, Imperial College London, London, United Kingdom

https://orcid.org/0000-0001-7656-6340

⨯
Doryen Bubeck ,

Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Writing – original draft

* E-mail: d.bubeck@imperial.ac.uk (DB); o.bozkurt@imperial.ac.uk (TOB)

Affiliation Department of Life Sciences, Imperial College London, London, United Kingdom

https://orcid.org/0000-0001-8241-9697

⨯
Tolga O. Bozkurt

Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

* E-mail: d.bubeck@imperial.ac.uk (DB); o.bozkurt@imperial.ac.uk (TOB)

Affiliation Department of Life Sciences, Imperial College London, London, United Kingdom

https://orcid.org/0000-0003-0507-6875

⨯

AlphaFold2-multimer guided high-accuracy prediction of typical and atypical ATG8-binding motifs

Tarhan Ibrahim,
Virendrasinh Khandare,
Federico Gabriel Mirkin,
Yasin Tumtas,
Doryen Bubeck,
Tolga O. Bozkurt

Published: February 8, 2023
https://doi.org/10.1371/journal.pbio.3001962

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