PhyloFisher: A phylogenomic package for resolving eukaryotic relationships

• Alexander K. Tice ,

  Contributed equally to this work with: Alexander K. Tice, David Žihala, Tomáš Pánek

  Roles Conceptualization, Formal analysis, Investigation, Methodology, Software, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Department of Biological Sciences, Mississippi State University, Mississippi State, Mississippi, United States of America, Institute for Genomics, Biocomputing & Biotechnology, Mississippi State University, Mississippi State, Mississippi, United States of America

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• David Žihala ,

  Contributed equally to this work with: Alexander K. Tice, David Žihala, Tomáš Pánek

  Roles Conceptualization, Investigation, Methodology, Software, Validation, Visualization, Writing – review & editing

  Affiliation Department of Biology and Ecology, Faculty of Science, University of Ostrava, Ostrava, Czech Republic

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• Tomáš Pánek ,

  Contributed equally to this work with: Alexander K. Tice, David Žihala, Tomáš Pánek

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Department of Biological Sciences, Mississippi State University, Mississippi State, Mississippi, United States of America, Department of Biology and Ecology, Faculty of Science, University of Ostrava, Ostrava, Czech Republic

  https://orcid.org/0000-0002-1738-8430

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• Robert E. Jones ,

  Roles Conceptualization, Formal analysis, Investigation, Methodology, Software, Visualization, Writing – review & editing

  ¶‡ REJ and EDS also contributed equally to this work.

  Affiliations Department of Biological Sciences, Mississippi State University, Mississippi State, Mississippi, United States of America, Institute for Genomics, Biocomputing & Biotechnology, Mississippi State University, Mississippi State, Mississippi, United States of America

  https://orcid.org/0000-0001-5227-4773

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• Eric D. Salomaki ,

  Roles Conceptualization, Methodology, Software, Validation, Writing – review & editing

  ¶‡ REJ and EDS also contributed equally to this work.

  Affiliation Institute of Parasitology, Biology Centre Czech Academy of Sciences, České Budějovice, Czech Republic

  https://orcid.org/0000-0001-6924-0844

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• Serafim Nenarokov,

  Roles Methodology, Software, Visualization, Writing – review & editing

  Affiliation Institute of Parasitology, Biology Centre Czech Academy of Sciences, České Budějovice, Czech Republic

  https://orcid.org/0000-0001-7699-3879

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• Fabien Burki,

  Roles Conceptualization, Methodology, Writing – review & editing

  Affiliations Department of Organismal Biology, Uppsala University, Uppsala, Sweden, Science for Life Laboratory, Uppsala University, Uppsala, Sweden

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• Marek Eliáš,

  Roles Conceptualization, Investigation, Methodology, Resources, Supervision, Writing – review & editing

  Affiliation Department of Biology and Ecology, Faculty of Science, University of Ostrava, Ostrava, Czech Republic

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• Laura Eme,

  Roles Conceptualization, Writing – review & editing

  Affiliation Unité d’Ecologie, Systématique et Evolution, CNRS, Université Paris-Saclay, Paris, France

  https://orcid.org/0000-0002-0510-8868

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• Andrew J. Roger,

  Roles Conceptualization, Investigation, Methodology, Resources, Writing – review & editing

  Affiliation Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Canada

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• Antonis Rokas,

  Roles Data curation, Methodology, Resources, Validation, Writing – review & editing

  Affiliation Department of Biological Sciences, Vanderbilt University, Nashville, Tennessee, United States of America

  https://orcid.org/0000-0002-7248-6551

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• Xing-Xing Shen,

  Roles Investigation, Methodology, Resources, Validation, Writing – review & editing

  Affiliation State Key Laboratory of Rice Biology and Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, Zhejiang University, Hangzhou, China

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• Jürgen F. H. Strassert,

  Roles Methodology, Writing – review & editing

  Affiliations Department of Organismal Biology, Uppsala University, Uppsala, Sweden, Leibniz Institute of Freshwater Ecology and Inland Fisheries, Ecosystem Research, Berlin, Germany

  https://orcid.org/0000-0001-6786-7563

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• Martin Kolísko ,

  Roles Conceptualization, Investigation, Methodology, Resources, Software, Visualization, Writing – review & editing

  * E-mail: martin.kolisko@gmail.com (MK); matthew.brown@msstate.edu (MWB)

  Affiliations Institute of Parasitology, Biology Centre Czech Academy of Sciences, České Budějovice, Czech Republic, Faculty of Science, University of South Bohemia, České Budějovice, Czech Republic

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• Matthew W. Brown

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: martin.kolisko@gmail.com (MK); matthew.brown@msstate.edu (MWB)

  Affiliations Department of Biological Sciences, Mississippi State University, Mississippi State, Mississippi, United States of America, Institute for Genomics, Biocomputing & Biotechnology, Mississippi State University, Mississippi State, Mississippi, United States of America

  https://orcid.org/0000-0002-1254-0608

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