IVEN: A quantitative tool to describe 3D cell position and neighbourhood reveals architectural changes in FGF4-treated preimplantation embryos

• Jessica E. Forsyth,

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Resources, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliations Faculty of Biology, Medicine and Health (FBMH), Division of Developmental Biology & Medicine, Michael Smith Building, University of Manchester, Manchester, United Kingdom, School of Mathematics, Alan Turing Building, University of Manchester, Manchester, United Kingdom

  https://orcid.org/0000-0002-5839-9160

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• Ali H. Al-Anbaki,

  Roles Data curation, Funding acquisition, Investigation

  Affiliation Faculty of Biology, Medicine and Health (FBMH), Division of Developmental Biology & Medicine, Michael Smith Building, University of Manchester, Manchester, United Kingdom

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• Roberto de la Fuente,

  Roles Investigation

  Affiliations Faculty of Biology, Medicine and Health (FBMH), Division of Developmental Biology & Medicine, Michael Smith Building, University of Manchester, Manchester, United Kingdom, Department of Experimental Embryology, Institute of Genetics and Animal Biotechnology, Polish Academy of Sciences, Jastrzębiec, Poland

  https://orcid.org/0000-0002-7567-032X

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• Nikkinder Modare,

  Roles Data curation, Investigation

  Affiliation Faculty of Biology, Medicine and Health (FBMH), Division of Developmental Biology & Medicine, Michael Smith Building, University of Manchester, Manchester, United Kingdom

  https://orcid.org/0000-0001-5417-5795

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• Diego Perez-Cortes,

  Roles Data curation, Investigation

  Affiliation Faculty of Biology, Medicine and Health (FBMH), Division of Developmental Biology & Medicine, Michael Smith Building, University of Manchester, Manchester, United Kingdom

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• Isabel Rivera,

  Roles Investigation

  Affiliation Faculty of Biology, Medicine and Health (FBMH), Division of Developmental Biology & Medicine, Michael Smith Building, University of Manchester, Manchester, United Kingdom

  https://orcid.org/0000-0002-2026-3428

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• Rowena Seaton Kelly,

  Roles Data curation, Investigation

  Affiliation Faculty of Biology, Medicine and Health (FBMH), Division of Developmental Biology & Medicine, Michael Smith Building, University of Manchester, Manchester, United Kingdom

  https://orcid.org/0000-0002-0183-9954

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• Simon Cotter,

  Roles Methodology, Software, Supervision, Writing – review & editing

  Affiliation School of Mathematics, Alan Turing Building, University of Manchester, Manchester, United Kingdom

  https://orcid.org/0000-0001-5974-7393

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• Berenika Plusa

  Roles Conceptualization, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: berenika.plusa@manchester.ac.uk

  Affiliation Faculty of Biology, Medicine and Health (FBMH), Division of Developmental Biology & Medicine, Michael Smith Building, University of Manchester, Manchester, United Kingdom

  https://orcid.org/0000-0003-2214-5940

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